Information for 13-TTATGTATGG (Motif 20)


Reverse Opposite:

p-value:1e-4
log p-value:-1.020e+01
Information Content per bp:1.972
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif45.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets151.0 +/- 92.2bp
Average Position of motif in Background133.9 +/- 66.5bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0025.1_NFIL3/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TTATGTATGG-
TTATGTAACAT

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTATGTATGG--
TGATTTATGGCC

MA0594.1_Hoxa9/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTATGTATGG-
TGATTTATGGC

MA0124.1_NKX3-1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTATGTATGG
-TAAGTAT--

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTATGTATGG-----
NNTNNTGTCTGGNNTNG

MA0485.1_Hoxc9/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTATGTATGG--
NTGATTTATGGCC

MA0033.1_FOXL1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTATGTATGG
-TATGTNTA-

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTATGTATGG--
TGATTTATGGCC

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTATGTATGG
GHATATKCAT--

MF0008.1_MADS_class/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTATGTATGG
CCATATATGG