Information for 12-ACACAGAGAGCC (Motif 21)


Reverse Opposite:

p-value:1e-3
log p-value:-8.935e+00
Information Content per bp:1.978
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets128.2 +/- 72.3bp
Average Position of motif in Background107.6 +/- 85.5bp
Strand Bias (log2 ratio + to - strand density)3.7
Multiplicity (# of sites on avg that occur together)3.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ACACAGAGAGCC
ACAAAG------

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ACACAGAGAGCC
-CACAGN-----

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-ACACAGAGAGCC--
NNNACCGAGAGTNNN

PB0139.1_Irf5_2/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ACACAGAGAGCC--
TTGACCGAGAATTCC

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.53
Offset:7
Orientation:forward strand
Alignment:ACACAGAGAGCC
-------CAGCC

MA0007.2_AR/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----ACACAGAGAGCC
AAGAACAGAATGTTC-

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:ACACAGAGAGCC
----AGCGCGCC

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--ACACAGAGAGCC-
GAGCACAGCAGGACA

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--ACACAGAGAGCC--
TGACCCAGTGACCTAC

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---ACACAGAGAGCC
GGAACAAAGR-----