Information for 17-GGCAAGGCGA (Motif 23)


Reverse Opposite:

p-value:1e-3
log p-value:-8.022e+00
Information Content per bp:1.863
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif91.6
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets127.2 +/- 58.6bp
Average Position of motif in Background119.9 +/- 65.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.68
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGGCGA
AAGGCAAGTGT-

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCAAGGCGA
BTCAAGGTCA

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGCAAGGCGA
NTCAAGGTCA

MA0505.1_Nr5a2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGCAAGGCGA--
AAGTTCAAGGTCAGC

MA0141.2_Esrrb/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGGCGA
AGCTCAAGGTCA

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGGCGA
AGGTCAAGGTCA

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGGCGA
TTGCCAAG----

MA0592.1_ESRRA/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGCAAGGCGA--
-CCAAGGTCACA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGCAAGGCGA-
-TCAAGGTCAN

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GGCAAGGCGA
NGTTGCCATGGCAA