Information for 15-TTGAGTTGAGTT (Motif 24)


Reverse Opposite:

p-value:1e-3
log p-value:-7.301e+00
Information Content per bp:1.967
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 23.7bp
Average Position of motif in Background93.4 +/- 50.3bp
Strand Bias (log2 ratio + to - strand density)3.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TTGAGTTGAGTT
NNNTATTGAATTGNNN-

MA0122.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TTGAGTTGAGTT
TTAAGTGGA---

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTGAGTTGAGTT
CTTGAGTGGCT--

PB0037.1_Isgf3g_1/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TTGAGTTGAGTT----
-TNAGTTTCGATTTTN

MA0133.1_BRCA1/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TTGAGTTGAGTT
--GTGTTGN---

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TTGAGTTGAGTT-
NTNNTTAAGTGGNTNAN

MA0595.1_SREBF1/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TTGAGTTGAGTT
GTGGGGTGAT--

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TTGAGTTGAGTT
CTYRAGTGSY---

PH0037.1_Hdx/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TTGAGTTGAGTT------
-TNNNATGATTTCNNCNN

MA0027.1_En1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:TTGAGTTGAGTT-
--AAGTAGTGCCC