Information for 17-CAAACAAACCAA (Motif 26)


Reverse Opposite:

p-value:1e-3
log p-value:-7.146e+00
Information Content per bp:1.696
Number of Target Sequences with motif341.0
Percentage of Target Sequences with motif8.89%
Number of Background Sequences with motif3463.2
Percentage of Background Sequences with motif7.50%
Average Position of motif in Targets117.4 +/- 82.1bp
Average Position of motif in Background114.2 +/- 63.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0041.1_Foxd3/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CAAACAAACCAA-
-AAACAAACATTC

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAAACAAACCAA-
AAACAGACAAAGGAAT

PB0016.1_Foxj1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAAACAAACCAA
AAAGTAAACAAAAATT

MA0042.1_FOXI1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAAACAAACCAA-
-AAACAAACANNC

PB0123.1_Foxl1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CAAACAAACCAA
ATATCAAAACAAAACA-

PB0017.1_Foxj3_1/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CAAACAAACCAA
AAAAAGTAAACAAACAC-

MA0481.1_FOXP1/Jaspar

Match Rank:7
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CAAACAAACCAA
CAAAAGTAAACAAAG---

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CAAACAAACCAA
--AACAAT----

MA0084.1_SRY/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAAACAAACCAA
GTAAACAAT----

MA0514.1_Sox3/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAAACAAACCAA
AAAACAAAGG--