Information for 3-GTTCCGAATGAC (Motif 5)


Reverse Opposite:

p-value:1e-9
log p-value:-2.257e+01
Information Content per bp:1.820
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif13.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets78.8 +/- 68.5bp
Average Position of motif in Background125.5 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:1
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GTTCCGAATGAC
------CATGAC

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTTCCGAATGAC---
NAGTTTCABTHTGACTNW

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTTCCGAATGAC-
NAGGTCACNNTGACC

PB0108.1_Atf1_2/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GTTCCGAATGAC-------
-----GAATGACGAATAAC

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GTTCCGAATGAC---
---NTGATTGACAGN

MA0067.1_Pax2/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GTTCCGAATGAC-
-----NCGTGACN

PB0115.1_Ehf_2/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----GTTCCGAATGAC
TAGTATTTCCGATCTT-

MA0258.2_ESR2/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GTTCCGAATGAC--
AGGNCANNGTGACCT

MA0081.1_SPIB/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GTTCCGAATGAC
-TTCCTCT----

MA0046.1_HNF1A/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GTTCCGAATGAC-
GGTTAATAATTAAC