Information for 4-GTCTGCTTTG (Motif 9)


Reverse Opposite:

p-value:1e-8
log p-value:-1.912e+01
Information Content per bp:1.648
Number of Target Sequences with motif193.0
Percentage of Target Sequences with motif5.03%
Number of Background Sequences with motif1502.2
Percentage of Background Sequences with motif3.25%
Average Position of motif in Targets116.6 +/- 86.8bp
Average Position of motif in Background114.3 +/- 65.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTCTGCTTTG
VBSYGTCTGG----

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTCTGCTTTG
CTGTCTGG----

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GTCTGCTTTG
TWGTCTGV----

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTCTGCTTTG
GGTCTGGCAT-

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GTCTGCTTTG----
----CCTTTGATGT

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GTCTGCTTTG-
NNTNNTGTCTGGNNTNG

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GTCTGCTTTG---
NNTGTTTATTTTGGCA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTCTGCTTTG-------
ATTTCCTTTGATCTATA

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GTCTGCTTTG-
-----CTTTGT

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GTCTGCTTTG
NNNNTTGTGTGCTTNN