Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3835)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46174)	% of Background Sequences with Motif
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-9	-2.246e+01	0.0000	538.0	14.03%	4963.7	10.75%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-8	-1.974e+01	0.0000	310.0	8.08%	2656.7	5.76%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-8	-1.872e+01	0.0000	242.0	6.31%	1994.6	4.32%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-7	-1.787e+01	0.0000	530.0	13.82%	5047.0	10.93%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-7	-1.731e+01	0.0000	290.0	7.56%	2519.7	5.46%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-7	-1.695e+01	0.0000	236.0	6.15%	1978.1	4.29%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-7	-1.671e+01	0.0000	440.0	11.47%	4119.7	8.92%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-6	-1.478e+01	0.0000	664.0	17.31%	6659.3	14.43%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-6	-1.461e+01	0.0000	407.0	10.61%	3844.8	8.33%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-5	-1.272e+01	0.0001	217.0	5.66%	1901.2	4.12%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-5	-1.240e+01	0.0001	148.0	3.86%	1210.9	2.62%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-4	-9.983e+00	0.0010	173.0	4.51%	1529.4	3.31%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-4	-9.760e+00	0.0012	770.0	20.08%	8149.4	17.65%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-3	-7.083e+00	0.0158	645.0	16.82%	6910.1	14.97%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-6.389e+00	0.0296	493.0	12.86%	5224.3	11.32%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-4.978e+00	0.1136	213.0	5.55%	2162.0	4.68%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-4.868e+00	0.1194	170.0	4.43%	1692.2	3.67%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-4.605e+00	0.1467	115.0	3.00%	1105.7	2.40%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-4.551e+00	0.1467	352.0	9.18%	3754.5	8.13%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-4.278e+00	0.1831	61.0	1.59%	544.3	1.18%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-4.109e+00	0.2065	464.0	12.10%	5076.4	11.00%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-3.983e+00	0.2237	39.0	1.02%	327.3	0.71%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.981e+00	0.2237	24.0	0.63%	180.4	0.39%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-1	-3.815e+00	0.2425	38.0	0.99%	321.8	0.70%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.720e+00	0.2560	650.0	16.95%	7278.1	15.77%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-3.711e+00	0.2560	48.0	1.25%	426.8	0.92%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.566e+00	0.2764	988.0	25.76%	11273.5	24.42%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-3.499e+00	0.2851	67.0	1.75%	633.9	1.37%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.294e+00	0.3377	253.0	6.60%	2722.7	5.90%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.193e+00	0.3613	26.0	0.68%	215.8	0.47%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-3.156e+00	0.3627	330.0	8.60%	3618.1	7.84%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.118e+00	0.3650	349.0	9.10%	3841.8	8.32%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.064e+00	0.3736	57.0	1.49%	542.3	1.17%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.881e+00	0.4354	757.0	19.74%	8642.8	18.72%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.785e+00	0.4654	861.0	22.45%	9885.3	21.41%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.699e+00	0.4931	483.0	12.59%	5446.8	11.80%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.696e+00	0.4931	216.0	5.63%	2347.1	5.08%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.598e+00	0.5168	46.0	1.20%	441.1	0.96%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.552e+00	0.5275	617.0	16.09%	7039.8	15.25%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.515e+00	0.5337	42.0	1.10%	401.5	0.87%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.514e+00	0.5337	205.0	5.35%	2236.1	4.84%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.501e+00	0.5337	85.0	2.22%	874.7	1.89%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.383e+00	0.5666	8.0	0.21%	55.3	0.12%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-2.332e+00	0.5827	135.0	3.52%	1449.9	3.14%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.278e+00	0.6015	73.0	1.90%	752.6	1.63%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.259e+00	0.6015	52.0	1.36%	520.9	1.13%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.214e+00	0.6136	52.0	1.36%	522.3	1.13%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.194e+00	0.6136	197.0	5.14%	2172.5	4.71%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.174e+00	0.6136	654.0	17.05%	7533.9	16.32%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.085e+00	0.6560	89.0	2.32%	943.9	2.04%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.047e+00	0.6685	263.0	6.86%	2953.0	6.40%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.959e+00	0.7161	58.0	1.51%	602.0	1.30%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.953e+00	0.7161	347.0	9.05%	3947.2	8.55%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.932e+00	0.7161	358.0	9.34%	4079.7	8.84%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.916e+00	0.7161	131.0	3.42%	1435.1	3.11%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.913e+00	0.7161	429.0	11.19%	4917.7	10.65%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.910e+00	0.7161	50.0	1.30%	514.6	1.11%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.910e+00	0.7161	799.0	20.83%	9299.8	20.15%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.898e+00	0.7161	180.0	4.69%	2003.6	4.34%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.890e+00	0.7161	721.0	18.80%	8376.4	18.15%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.839e+00	0.7161	256.0	6.68%	2895.4	6.27%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.765e+00	0.7170	44.0	1.15%	454.1	0.98%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.765e+00	0.7170	44.0	1.15%	454.1	0.98%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.707e+00	0.7483	278.0	7.25%	3169.2	6.87%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.684e+00	0.7539	44.0	1.15%	458.6	0.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.682e+00	0.7539	408.0	10.64%	4704.9	10.19%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.680e+00	0.7539	84.0	2.19%	913.5	1.98%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.674e+00	0.7539	156.0	4.07%	1746.4	3.78%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.665e+00	0.7539	194.0	5.06%	2190.3	4.74%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.646e+00	0.7539	134.0	3.49%	1493.3	3.23%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.597e+00	0.7539	52.0	1.36%	553.6	1.20%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.565e+00	0.7670	484.0	12.62%	5623.8	12.18%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.556e+00	0.7670	209.0	5.45%	2378.7	5.15%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.541e+00	0.7670	154.0	4.02%	1736.1	3.76%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.496e+00	0.7884	243.0	6.34%	2785.0	6.03%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.471e+00	0.7980	550.0	14.34%	6424.5	13.92%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.463e+00	0.7980	245.0	6.39%	2813.1	6.09%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.457e+00	0.7980	670.0	17.47%	7855.7	17.02%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.447e+00	0.7980	250.0	6.52%	2874.8	6.23%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.373e+00	0.8357	314.0	8.19%	3641.5	7.89%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.371e+00	0.8357	628.0	16.38%	7373.1	15.97%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.358e+00	0.8357	51.0	1.33%	556.7	1.21%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.281e+00	0.8831	719.0	18.75%	8479.7	18.37%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.272e+00	0.8831	62.0	1.62%	689.1	1.49%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.261e+00	0.8831	30.0	0.78%	321.1	0.70%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.250e+00	0.8831	372.0	9.70%	4350.2	9.42%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.245e+00	0.8831	555.0	14.47%	6530.1	14.15%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.235e+00	0.8831	49.0	1.28%	541.5	1.17%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.203e+00	0.8908	102.0	2.66%	1162.8	2.52%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.196e+00	0.8908	362.0	9.44%	4241.2	9.19%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.194e+00	0.8908	29.0	0.76%	313.3	0.68%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.186e+00	0.8908	624.0	16.27%	7367.0	15.96%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.177e+00	0.8908	379.0	9.88%	4447.1	9.63%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.176e+00	0.8908	288.0	7.51%	3365.7	7.29%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.156e+00	0.8908	20.0	0.52%	212.8	0.46%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.099e+00	0.9160	27.0	0.70%	295.8	0.64%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.073e+00	0.9309	677.0	17.65%	8029.7	17.39%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.070e+00	0.9309	896.0	23.36%	10653.4	23.08%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.054e+00	0.9309	270.0	7.04%	3172.2	6.87%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.041e+00	0.9319	414.0	10.80%	4892.9	10.60%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.034e+00	0.9319	139.0	3.62%	1618.7	3.51%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-9.899e-01	0.9619	380.0	9.91%	4497.3	9.74%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.892e-01	0.9619	130.0	3.39%	1517.8	3.29%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.818e-01	0.9619	32.0	0.83%	360.5	0.78%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.649e-01	0.9619	170.0	4.43%	1996.7	4.33%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-9.450e-01	0.9680	23.0	0.60%	257.2	0.56%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-9.014e-01	1.0000	29.0	0.76%	330.1	0.72%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-8.631e-01	1.0000	442.0	11.53%	5269.5	11.42%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.623e-01	1.0000	93.0	2.43%	1093.5	2.37%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-8.591e-01	1.0000	11.0	0.29%	121.3	0.26%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-8.561e-01	1.0000	4.0	0.10%	40.2	0.09%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-8.510e-01	1.0000	113.0	2.95%	1333.7	2.89%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-8.212e-01	1.0000	78.0	2.03%	919.1	1.99%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.189e-01	1.0000	67.0	1.75%	788.7	1.71%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-7.791e-01	1.0000	77.0	2.01%	912.8	1.98%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.732e-01	1.0000	371.0	9.67%	4440.5	9.62%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-7.720e-01	1.0000	72.0	1.88%	853.6	1.85%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.645e-01	1.0000	239.0	6.23%	2857.4	6.19%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.638e-01	1.0000	477.0	12.44%	5716.7	12.38%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.551e-01	1.0000	1369.0	35.70%	16446.5	35.63%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.529e-01	1.0000	182.0	4.75%	2175.8	4.71%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-7.367e-01	1.0000	750.0	19.56%	9007.5	19.51%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-7.339e-01	1.0000	22.0	0.57%	258.1	0.56%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.283e-01	1.0000	751.0	19.58%	9022.4	19.55%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.141e-01	1.0000	456.0	11.89%	5478.9	11.87%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.109e-01	1.0000	102.0	2.66%	1221.4	2.65%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.993e-01	1.0000	235.0	6.13%	2823.0	6.12%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.974e-01	1.0000	281.0	7.33%	3377.6	7.32%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.961e-01	1.0000	214.0	5.58%	2571.3	5.57%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.958e-01	1.0000	241.0	6.28%	2897.0	6.28%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.940e-01	1.0000	30.0	0.78%	357.9	0.78%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.902e-01	1.0000	234.0	6.10%	2813.4	6.09%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.742e-01	1.0000	652.0	17.00%	7850.3	17.01%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-6.706e-01	1.0000	64.0	1.67%	769.2	1.67%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.621e-01	1.0000	226.0	5.89%	2723.5	5.90%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.536e-01	1.0000	363.0	9.47%	4376.2	9.48%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.249e-01	1.0000	918.0	23.94%	11073.0	23.99%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-6.244e-01	1.0000	215.0	5.61%	2599.1	5.63%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-6.168e-01	1.0000	129.0	3.36%	1562.0	3.38%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.151e-01	1.0000	55.0	1.43%	667.4	1.45%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.134e-01	1.0000	321.0	8.37%	3881.1	8.41%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.079e-01	1.0000	133.0	3.47%	1612.2	3.49%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.021e-01	1.0000	304.0	7.93%	3679.4	7.97%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.990e-01	1.0000	582.0	15.18%	7034.2	15.24%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.925e-01	1.0000	154.0	4.02%	1869.1	4.05%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.846e-01	1.0000	624.0	16.27%	7546.7	16.35%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.813e-01	1.0000	841.0	21.93%	10164.2	22.02%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-5.806e-01	1.0000	7.0	0.18%	85.6	0.19%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.639e-01	1.0000	98.0	2.56%	1196.3	2.59%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.610e-01	1.0000	263.0	6.86%	3195.9	6.92%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.553e-01	1.0000	116.0	3.02%	1416.4	3.07%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.455e-01	1.0000	483.0	12.59%	5859.4	12.69%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.321e-01	1.0000	113.0	2.95%	1384.7	3.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.270e-01	1.0000	17.0	0.44%	212.7	0.46%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.145e-01	1.0000	78.0	2.03%	961.8	2.08%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-5.102e-01	1.0000	8.0	0.21%	101.0	0.22%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-5.077e-01	1.0000	858.0	22.37%	10403.3	22.54%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.017e-01	1.0000	22.0	0.57%	276.7	0.60%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.962e-01	1.0000	102.0	2.66%	1257.6	2.72%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.927e-01	1.0000	1093.0	28.50%	13246.3	28.70%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.901e-01	1.0000	15.0	0.39%	190.9	0.41%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.775e-01	1.0000	415.0	10.82%	5062.2	10.97%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-4.759e-01	1.0000	60.0	1.56%	747.8	1.62%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-4.661e-01	1.0000	121.0	3.16%	1495.4	3.24%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-4.655e-01	1.0000	65.0	1.69%	810.9	1.76%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.624e-01	1.0000	617.0	16.09%	7513.6	16.28%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.604e-01	1.0000	1.0	0.03%	12.7	0.03%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-4.595e-01	1.0000	80.0	2.09%	995.4	2.16%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.542e-01	1.0000	62.0	1.62%	775.7	1.68%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.522e-01	1.0000	241.0	6.28%	2961.0	6.41%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.462e-01	1.0000	5.0	0.13%	66.1	0.14%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.363e-01	1.0000	398.0	10.38%	4872.5	10.56%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.330e-01	1.0000	14.0	0.37%	182.5	0.40%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.965e-01	1.0000	38.0	0.99%	487.6	1.06%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.895e-01	1.0000	17.0	0.44%	224.3	0.49%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.875e-01	1.0000	46.0	1.20%	588.3	1.27%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.845e-01	1.0000	675.0	17.60%	8254.2	17.88%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-3.817e-01	1.0000	104.0	2.71%	1306.9	2.83%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.815e-01	1.0000	206.0	5.37%	2556.2	5.54%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.798e-01	1.0000	439.0	11.45%	5394.7	11.69%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-3.575e-01	1.0000	274.0	7.14%	3395.6	7.36%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-3.487e-01	1.0000	434.0	11.32%	5348.6	11.59%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.373e-01	1.0000	629.0	16.40%	7723.5	16.73%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.345e-01	1.0000	242.0	6.31%	3013.1	6.53%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.339e-01	1.0000	189.0	4.93%	2364.3	5.12%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.219e-01	1.0000	141.0	3.68%	1778.2	3.85%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.163e-01	1.0000	49.0	1.28%	638.9	1.38%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.162e-01	1.0000	102.0	2.66%	1298.0	2.81%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.088e-01	1.0000	28.0	0.73%	374.4	0.81%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-3.012e-01	1.0000	431.0	11.24%	5336.5	11.56%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.951e-01	1.0000	63.0	1.64%	818.7	1.77%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.945e-01	1.0000	5.0	0.13%	75.6	0.16%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.905e-01	1.0000	15.0	0.39%	209.2	0.45%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.886e-01	1.0000	100.0	2.61%	1281.1	2.78%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.877e-01	1.0000	58.0	1.51%	757.2	1.64%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.875e-01	1.0000	1136.0	29.62%	13899.5	30.11%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.838e-01	1.0000	111.0	2.89%	1419.7	3.08%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.767e-01	1.0000	152.0	3.96%	1929.8	4.18%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.763e-01	1.0000	20.0	0.52%	276.3	0.60%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.717e-01	1.0000	87.0	2.27%	1124.0	2.43%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.674e-01	1.0000	1786.0	46.57%	21761.5	47.14%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.664e-01	1.0000	134.0	3.49%	1710.2	3.70%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.606e-01	1.0000	415.0	10.82%	5164.6	11.19%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.597e-01	1.0000	88.0	2.29%	1140.4	2.47%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.481e-01	1.0000	179.0	4.67%	2274.3	4.93%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.413e-01	1.0000	268.0	6.99%	3374.2	7.31%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.405e-01	1.0000	270.0	7.04%	3399.7	7.36%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.349e-01	1.0000	398.0	10.38%	4972.2	10.77%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.344e-01	1.0000	52.0	1.36%	694.8	1.51%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.343e-01	1.0000	187.0	4.88%	2379.8	5.16%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.207e-01	1.0000	104.0	2.71%	1353.6	2.93%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.180e-01	1.0000	312.0	8.14%	3928.2	8.51%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.077e-01	1.0000	48.0	1.25%	650.8	1.41%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.990e-01	1.0000	34.0	0.89%	472.6	1.02%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.953e-01	1.0000	955.0	24.90%	11790.4	25.54%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.899e-01	1.0000	104.0	2.71%	1365.5	2.96%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.891e-01	1.0000	245.0	6.39%	3120.7	6.76%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.863e-01	1.0000	17.0	0.44%	251.6	0.54%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.846e-01	1.0000	1287.0	33.56%	15825.3	34.28%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.815e-01	1.0000	12.0	0.31%	184.8	0.40%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.779e-01	1.0000	24.0	0.63%	346.4	0.75%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.752e-01	1.0000	1.0	0.03%	22.6	0.05%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.698e-01	1.0000	629.0	16.40%	7848.4	17.00%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.685e-01	1.0000	38.0	0.99%	532.1	1.15%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.670e-01	1.0000	74.0	1.93%	995.6	2.16%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.585e-01	1.0000	83.0	2.16%	1113.5	2.41%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.510e-01	1.0000	821.0	21.41%	10210.4	22.12%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.424e-01	1.0000	104.0	2.71%	1387.3	3.01%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.229e-01	1.0000	199.0	5.19%	2594.7	5.62%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.189e-01	1.0000	281.0	7.33%	3619.2	7.84%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.148e-01	1.0000	256.0	6.68%	3312.3	7.18%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.108e-01	1.0000	203.0	5.29%	2654.2	5.75%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.005e-01	1.0000	73.0	1.90%	1014.0	2.20%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-9.966e-02	1.0000	1249.0	32.57%	15489.9	33.56%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-9.952e-02	1.0000	563.0	14.68%	7123.5	15.43%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-8.938e-02	1.0000	323.0	8.42%	4173.7	9.04%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-8.435e-02	1.0000	41.0	1.07%	604.5	1.31%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.974e-02	1.0000	1968.0	51.32%	24214.8	52.46%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.922e-02	1.0000	1051.0	27.41%	13125.7	28.43%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-7.160e-02	1.0000	1863.0	48.58%	22971.6	49.76%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-7.104e-02	1.0000	51.0	1.33%	745.8	1.62%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.567e-02	1.0000	319.0	8.32%	4157.8	9.01%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.756e-02	1.0000	110.0	2.87%	1527.8	3.31%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-5.735e-02	1.0000	267.0	6.96%	3520.3	7.63%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.282e-02	1.0000	46.0	1.20%	693.0	1.50%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.133e-02	1.0000	116.0	3.02%	1612.1	3.49%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.101e-02	1.0000	108.0	2.82%	1509.7	3.27%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.878e-02	1.0000	246.0	6.41%	3271.5	7.09%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-4.701e-02	1.0000	195.0	5.08%	2629.3	5.70%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.337e-02	1.0000	301.0	7.85%	3999.8	8.66%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.195e-02	1.0000	557.0	14.52%	7198.1	15.59%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.077e-02	1.0000	1030.0	26.86%	13019.9	28.21%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.976e-02	1.0000	447.0	11.66%	5839.9	12.65%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-2.718e-02	1.0000	282.0	7.35%	3779.0	8.19%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.455e-02	1.0000	267.0	6.96%	3597.6	7.79%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.950e-02	1.0000	532.0	13.87%	6944.0	15.04%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.047e-02	1.0000	97.0	2.53%	1455.0	3.15%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-9.390e-03	1.0000	980.0	25.55%	12566.6	27.22%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-8.960e-03	1.0000	374.0	9.75%	5039.3	10.92%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-4.567e-03	1.0000	34.0	0.89%	614.9	1.33%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.880e-03	1.0000	73.0	1.90%	1173.3	2.54%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.211e-03	1.0000	1279.0	33.35%	16357.8	35.44%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-6.010e-04	1.0000	49.0	1.28%	898.4	1.95%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.720e-04	1.0000	1653.0	43.10%	21173.6	45.87%