Information for 13-AGGCCATACAGA (Motif 13)

C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A
Reverse Opposite:
A C G T A T G C A C G T A C T G C G A T C G T A A G C T A C T G A C T G A G T C A T G C A C G T
p-value:1e-185
log p-value:-4.282e+02
Information Content per bp:1.973
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif37.01%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets155.8 +/- 113.1bp
Average Position of motif in Background174.4 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGCCATACAGA
AGACCACCCASR
 C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A
C T G A A C T G T C G A T G A C G A T C G C T A T A G C T G A C G T A C C G T A T A G C T C A G

CDX1/MA0878.2/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGCCATACAGA
-GGCCATAAAAC
 C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A
A C G T C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGCCATACAGA---
CAAATCCAGACATCACA
 A C G T A C G T C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGGCCATACAGA
---CCAGACAG-
 C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

CDX4/MA1473.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGGCCATACAGA
-GGCAATAAAAC
 C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A
A C G T C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCATACAGA
CTAGGCCT------
 A C G T A C G T C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGGCCATACAGA
TRAGGTCA------
 A C G T A C G T C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGCCATACAGA
AAGCAATAAAAA
 C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

NFYA/MA0060.3/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGGCCATACAGA
-AACCAATCAGA
 C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A
A C G T T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGCCATACAGA--
AAAGGTAATAAAATTT
 A C G T A C G T C G T A A T C G A C T G A G T C A G T C C T G A A C G T C G T A A G T C C G T A A T C G C G T A A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T