Information for 4-CCGGACAGGGCC (Motif 4)

A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C A G T C A C G T C T A G A G C T A G T C G A T C C T A G C T A G
p-value:1e-309
log p-value:-7.117e+02
Information Content per bp:1.931
Number of Target Sequences with motif114.0
Percentage of Target Sequences with motif74.03%
Number of Background Sequences with motif38.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets132.0 +/- 69.5bp
Average Position of motif in Background143.7 +/- 103.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCGGACAGGGCC
CCAGACAG----
 A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCGGACAGGGCC
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Zfx/MA0146.2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCGGACAGGGCC--
GGGGCCGAGGCCTG
 A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C A C G T A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCGGACAGGGCC
CCAGACRSVB--
 A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCGGACAGGGCC
TCTAGACA-----
 A C G T A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCGGACAGGGCC-
TCCCAGMCRAGCCCC
 A C G T A C G T A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCGGACAGGGCC
---CACAGN---
 A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCGGACAGGGCC--
NNAGGGACAAGGGCNC
 A C G T A C G T A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCGGACAGGGCC
-TTGACAGC---
 A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

MYOD1/MA0499.2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCGGACAGGGCC--
-NNGACAGGTGCNN
 A G T C A G T C C T A G T A C G C T G A A G T C C G T A T C A G C T A G A C T G A G T C A G T C A C G T A C G T
A C G T T C A G C A T G T C A G T C G A T A G C T C G A A T C G T A C G G A C T A T C G A T G C G C A T T A C G