Information for 9-GTCTGCTAAGTA (Motif 9)

A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A
Reverse Opposite:
A C G T C G T A A G T C A C G T A C G T G T C A A T C G A G T C C G T A A C T G C G T A A G T C
p-value:1e-233
log p-value:-5.378e+02
Information Content per bp:1.879
Number of Target Sequences with motif106.0
Percentage of Target Sequences with motif68.83%
Number of Background Sequences with motif108.6
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets124.9 +/- 87.8bp
Average Position of motif in Background125.0 +/- 122.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GTCTGCTAAGTA
VBSYGTCTGG------
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GTCTGCTAAGTA
CTGTCTGG------
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTCTGCTAAGTA
TWGTCTGV------
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GTCTGCTAAGTA
-NNTGCCAAGNN
 A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A
A C G T G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTCTGCTAAGTA
GGTCTGGCAT---
 A C G T A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Stat5b/MA1625.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTCTGCTAAGTA
NNNTTCTGGGAANNN
 A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A
A T C G C G T A A G C T A G C T G A C T T G A C G A C T C A T G C T A G C T A G C G T A C T G A C G T A G A C T T C A G

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GTCTGCTAAGTA
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCTGCTAAGTA---
TAAACTGATAAGAAGAT
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A A C G T A C G T A C G T
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

RBPJ/MA1116.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCTGCTAAGTA
-CCTGGGAAAG-
 A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A
A C G T A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GTCTGCTAAGTA
--TTGCCAAG--
 A C T G A C G T A G T C A C G T A C T G A T G C A C G T C G T A C G T A A C T G C G A T G T C A
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T