Information for 1-TGCCAAGGGYAA (Motif 1)

C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A
Reverse Opposite:
A C G T G A C T T C A G A G T C G T A C A G T C C G A T C G A T A C T G C T A G A G T C G C T A
p-value:1e-177
log p-value:-4.098e+02
Information Content per bp:1.804
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif32.74%
Number of Background Sequences with motif73.7
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets152.3 +/- 55.0bp
Average Position of motif in Background185.6 +/- 156.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAAGGGYAA
NNTGCCAAGNN---
 A C G T A C G T C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAGGGYAA
GGTGCCAAGT----
 A C G T A C G T C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGGGYAA
TTGCCAAG-----
 A C G T C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAGGGYAA
CGTGCCAAG-----
 A C G T A C G T C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGCCAAGGGYAA
-NTCAAGGTCA-
 C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGCCAAGGGYAA
-BTCAAGGTCA-
 C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

NR5A1/MA1540.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGCCAAGGGYAA
-GTCAAGGTCAC
 C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A
A C G T A C T G G A C T A T G C C T G A C G T A A C T G A C T G G A C T A G T C C T G A G A T C

EBF3/MA1637.1/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGGGYAA
TTCCCAAGGGAAT
 A C G T C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A
A C G T A G C T T A G C G A T C G A T C G T C A C T G A T C A G C T A G T C A G T C G A T G C A G C A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGCCAAGGGYAA-
---CAAGGHCANV
 C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Ebf2/MA1604.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGGGYAA
TTCCCAAGGGACT
 A C G T C G A T C T A G A G T C A G T C C G T A C G T A A C T G A C T G C T A G A G T C C T G A C G T A
A C G T A G C T T A G C G A T C G A T C G T C A C T G A T C A G C T A G C T A G T C G A T G A C G A C T