Information for 7-CTCACCRCTC (Motif 11)

A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A C T A G A G C T C T A G A C T G A G C T C T A G C G T A C T A G
p-value:1e-84
log p-value:-1.948e+02
Information Content per bp:1.826
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif34.52%
Number of Background Sequences with motif932.8
Percentage of Background Sequences with motif2.23%
Average Position of motif in Targets169.6 +/- 98.2bp
Average Position of motif in Background155.3 +/- 135.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-2/MA1645.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTCACCRCTC-----
-TAACCACTCAAGAA
 A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTCACCRCTC---
--AGCCACTCAAG
 A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTCACCRCTC--
--MRSCACTYAA
 A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C A C G T A C G T
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTCACCRCTC--
--AASCACTCAA
 A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C A C G T A C G T
A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTCACCRCTC---
---NSCACTYVAV
 A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTCACCRCTC---
---RSCACTYRAG
 A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTCACCRCTC
NNACTTACCTN--
 A C G T A C G T A C G T A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T

MAZ/MA1522.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTCACCRCTC---
--CGCCCCTCCCC
 A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A T G C A T C G A T G C T A G C T A G C T A G C C A G T T G A C T A G C A G T C A G T C

NKX2-5/MA0063.2/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTCACCRCTC----
---ACCACTCAAAA
 A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTCACCRCTC---
NNNNTTGACCCCTNNNN
 A C G T A C G T A C G T A C G T A G T C A C G T G A T C C T G A A G T C A G T C C T G A A G T C A C G T A G T C A C G T A C G T A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C