Information for 10-TGGGCCAGTA (Motif 14)

A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C A G C T C T A G A C T G A G T C A G T C A G T C C T G A
p-value:1e-72
log p-value:-1.666e+02
Information Content per bp:1.877
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif23.13%
Number of Background Sequences with motif333.4
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets164.7 +/- 81.0bp
Average Position of motif in Background162.9 +/- 140.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGGCCAGTA-
AAGGCAAGTGT
 A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Plagl1/MA1615.1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGGGCCAGTA
CCCTGGGGCCAGG-
 A C G T A C G T A C G T A C G T A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A
T A G C T A G C T A G C G C A T T A C G T C A G T A C G T A C G G T A C A T G C T C G A A T C G T A C G A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGGGCCAGTA-
AAWCTAGGTCARDNN
 A C G T A C G T A C G T A C G T A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGGGCCAGTA-
TYTGACCASWRG
 A C G T A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A A C G T
G A C T A G T C C G A T A C T G C T G A T G A C G T A C C G T A A T C G G C A T C T G A C T A G

NFYB/MA0502.2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGGCCAGTA--
NTGGCCAATGAG
 A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A A C G T A C G T
A G T C A C G T C T A G T C A G G A T C G T A C G T C A T C G A C G A T T A C G T C G A T A C G

Isl1/MA1608.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGGGCCAGTA---
--ATCCATTAGCA
 A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGGCCAGTA
CTAGGCCT---
 A C G T A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGGGCCAGTA--
--GGCCATTAAC
 A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

NR1D1/MA1531.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TGGGCCAGTA------
-GGGTCAGTAGGTCAG
 A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T C A G C A T G C T A G A C G T A G T C C G T A T A C G A C G T T C G A A C T G C T A G A C G T A G T C C T G A C T A G

HOXD8/MA0910.2/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TGGGCCAGTA-
---GCAATTAC
 A G C T C T A G A C T G C T A G A G T C A G T C C T G A A C T G A C G T C G T A A C G T
A C G T A C G T A C G T T C A G A G T C T G C A C G T A A C G T C A G T C G T A T G A C