Information for 12-RCAAGCAGCTTC (Motif 15)

C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C
Reverse Opposite:
C T A G C G T A C G T A A C T G A G T C A G C T C T A G A G T C A C G T A C G T A C T G A G T C
p-value:1e-69
log p-value:-1.609e+02
Information Content per bp:1.923
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif16.37%
Number of Background Sequences with motif89.1
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets191.8 +/- 127.0bp
Average Position of motif in Background124.8 +/- 126.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ascl2/MA0816.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:RCAAGCAGCTTC-
---AGCAGCTGCT
 C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C A C G T
A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--RCAAGCAGCTTC-
ADGGYAGYAGCATCT
 A C G T A C G T C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

NHLH1/MA0048.2/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:RCAAGCAGCTTC-
---CGCAGCTGCG
 C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C A C G T
A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:RCAAGCAGCTTC---
---DGCAGCTGCYSS
 C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A T C A T G C A T G C

MYOG/MA0500.2/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:RCAAGCAGCTTC--
--NNGCAGCTGCNN
 C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C A C G T A C G T
A C G T A C G T T A G C C T G A T C A G A G T C T C G A A C T G T G A C A G C T T C A G A G T C G A C T A T C G

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.63
Offset:7
Orientation:forward strand
Alignment:RCAAGCAGCTTC-
-------GCTTCC
 C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:RCAAGCAGCTTC---
---AGCAGCTGCTNN
 C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:RCAAGCAGCTTC
--CAGCAGCTGN
 C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C
A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

ASCL1/MA1100.2/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:RCAAGCAGCTTC-
---GGCAGCTGCC
 C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C A C G T
A C G T A C G T A C G T T C A G T C A G A G T C G C T A A T C G T A G C C A G T C T A G A G T C A G T C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:RCAAGCAGCTTC
---ANCAGCTG-
 C T A G A G T C C G T A C G T A C T A G A G T C C T G A C T A G A G T C A C G T A C G T A G T C
A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T