Information for 20-CTGCAGGC (Motif 33)

A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C
Reverse Opposite:
A C T G A G T C G T A C A C G T A C T G G T A C C G T A C T A G
p-value:1e-17
log p-value:-4.097e+01
Information Content per bp:1.875
Number of Target Sequences with motif138.0
Percentage of Target Sequences with motif49.11%
Number of Background Sequences with motif10369.0
Percentage of Background Sequences with motif24.83%
Average Position of motif in Targets176.8 +/- 125.9bp
Average Position of motif in Background158.4 +/- 147.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CTGCAGGC-
CACAGCAGGGG
 A C G T A C G T A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C A C G T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTGCAGGC
DCTCAGCAGG-
 A C G T A C G T A C G T A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

Zic2/MA1629.1/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTGCAGGC--
CTCACAGCAGGGGG
 A C G T A C G T A C G T A C G T A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CTGCAGGC--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------CTGCAGGC--
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTGCAGGC--
CACAGCAGGGGG
 A C G T A C G T A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CTGCAGGC--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTGCAGGC----
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

TFAP2C(var.2)/MA0814.2/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTGCAGGC--
NNCGCCTCAGGCNN
 A C G T A C G T A C G T A C G T A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
T A G C A G T C T A G C A T C G A T G C A T G C A C G T A T G C T C G A T A C G A T C G T A G C G T A C T G A C

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CTGCAGGC--
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A