Information for 21-GCCAGACC (Motif 34)

A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C A G C T A C T G A C T G A G T C
p-value:1e-17
log p-value:-4.020e+01
Information Content per bp:1.952
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif16.01%
Number of Background Sequences with motif1384.5
Percentage of Background Sequences with motif3.32%
Average Position of motif in Targets139.3 +/- 88.2bp
Average Position of motif in Background150.9 +/- 132.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGACC
ATGCCAGACN
 A C G T A C G T A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GCCAGACC-
-CCAGACAG
 A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C A C G T
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GCCAGACC-----
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCCAGACC--
GCCACACCCA
 A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C A C G T A C G T
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GCCAGACC---
-CCAGACRSVB
 A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCCAGACC
TCTAGACA
 A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGACC---
GGCCACACCCAN
 A C G T A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C A C G T A C G T A C G T
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GCCAGACC
AGGTGHCAGACA
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PAX5/MA0014.3/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCCAGACC--
GAGCGTGACCCC
 A C G T A C G T A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C A C G T A C G T
T C A G C T G A T A C G A G T C T C A G G C A T T A C G C T G A T A G C A G T C G T A C A G T C

Klf1/MA0493.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCCAGACC--
GGCCACACCCA
 A C G T A C T G A G T C A G T C C T G A A C T G C G T A A G T C A G T C A C G T A C G T
C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A