Information for 4-TGTGCACARTGG (Motif 4)

C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G
Reverse Opposite:
G T A C A G T C C G T A A G T C A C G T A C T G A G C T C T A G A G T C C G T A A G T C C G T A
p-value:1e-126
log p-value:-2.917e+02
Information Content per bp:1.848
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif26.33%
Number of Background Sequences with motif95.6
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets157.2 +/- 92.5bp
Average Position of motif in Background173.1 +/- 138.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGTGCACARTGG-----
NNTNNACAATGGGANNN
 C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TGTGCACARTGG--
---AAACAATGGCA
 C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGCACARTGG
NNGTATGTGCACATNNN
 A C G T A C G T A C G T A C G T A C G T C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

SOX2/MA0143.4/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGTGCACARTGG--
---AAACAATGGAA
 C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGCACARTGG
NTNTATGTGCACATNNN
 A C G T A C G T A C G T A C G T A C G T C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TGTGCACARTGG-
---GAACAATGGN
 C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G A C G T
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGTGCACARTGG
---GAACAATGG
 C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G
A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGTGCACARTGG-
---RAACAATGGN
 C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G A C G T
A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGTGCACARTGG
--VRAACAATGG
 C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G
A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGTGCACARTGG---
CTCACACAATGGCGC
 C G A T T C A G A C G T A C T G A G T C C T G A A G T C C G T A C T A G A C G T A C T G A C T G A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C