Information for 5-AAAACTTGGGCA (Motif 5)

G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A
Reverse Opposite:
A G C T A T C G A G T C A G T C A G T C C T G A C G T A A C T G A C G T C G A T A C G T A C G T
p-value:1e-123
log p-value:-2.839e+02
Information Content per bp:1.896
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif25.62%
Number of Background Sequences with motif92.8
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets169.2 +/- 126.5bp
Average Position of motif in Background141.5 +/- 140.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prdm15/MA1616.1/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAAACTTGGGCA
AGGAAAACCTGGAGC
 A C G T A C G T A C G T G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A
C T G A C T A G A C T G T C G A T C G A C T G A C T G A A G T C T G A C G A C T C T A G C T A G T G C A T C A G G A T C

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAAACTTGGGCA-----
-NNNNTTGGGCACNNCN
 G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAAACTTGGGCA-
-WAABTAGGTCAV
 G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AAAACTTGGGCA---
AAAACCTGGANHGGR
 G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A A C G T A C G T A C G T
C T G A C T G A T C G A T C G A A G T C T G A C G A C T A C T G C T A G G T C A T A G C G C A T T C A G C T A G T C A G

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAAACTTGGGCA----
-AAWCTAGGTCARDNN
 G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAAACTTGGGCA-
TATAAGTAGGTCAA
 A C G T G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAACTTGGGCA
--AAYTAGGTCA
 G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAACTTGGGCA
--AAYTAGGTCA
 G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORC/MA1151.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAAACTTGGGCA
ATAAGTAGGTCA
 G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AAAACTTGGGCA-
----NGTGGGCAT
 G T C A C G T A C G T A C G T A A G T C A C G T A G C T C T A G C T A G A C T G A T G C C T G A A C G T
A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T