Information for 8-GCCAGGCACGCY (Motif 8)

A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T
Reverse Opposite:
C T G A C T A G G A T C T C A G A C G T A T C G A G T C A T G C C G A T A C T G C T A G A T G C
p-value:1e-107
log p-value:-2.467e+02
Information Content per bp:1.779
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif25.98%
Number of Background Sequences with motif165.8
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets165.4 +/- 95.6bp
Average Position of motif in Background178.1 +/- 171.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCCAGGCACGCY-
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCCAGGCACGCY
AGCAACAGCCGCACC
 A C G T A C G T A C G T A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCACGCY
-CCAGACRSVB-
 A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCCAGGCACGCY
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCACGCY
-CCAGACAG---
 A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCCAGGCACGCY
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCACGCY----
-SCAGYCADGCATGAC
 A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCACGCY----
-NNGGCCACGCCTTTN
 A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCACGCY
-BCAGACWA---
 A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCCAGGCACGCY-
---TBGCACGCAA
 A T C G G A T C G T A C C G T A T A C G C T A G A T G C C G T A A G T C C T A G A G T C A G C T A C G T
A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A