{% extends 'base.html' %}
{% load static %}
{% block content %}
<p class="eyebrow">{{ record.project.code }} / {{ record.get_kind_display }}</p>
<div class="section-heading"><h1>{{ record.name }}</h1>{% if can_edit %}<a class="button" href="{{ lab_prefix }}/records/{{ record.pk }}/edit/">Edit record</a>{% endif %}</div>
<p class="muted">{{ record.local_id }}</p>
{% if record.archived %}<p class="notice">This record is archived.</p>{% endif %}
<div class="grid">
  <section class="card">
    <h2>Record information</h2>
    <dl>
      <dt>Species / Strain</dt><dd>{{ record.species|default:'—' }} / {{ record.strain|default:'—' }}</dd>
      <dt>Birth date</dt><dd>{{ record.birth_date|default:'—' }}</dd>
      <dt>Event / Operator</dt><dd>{{ record.event_date|default:'—' }} / {{ record.performed_by|default:'—' }}</dd>
      <dt>Barcode / Platform</dt><dd>{{ record.barcode|default:'—' }} / {{ record.platform|default:'—' }}</dd>
      <dt>Status</dt><dd>{{ record.get_status_display }}</dd>
      <dt>Genotype / Sex</dt><dd>{{ record.genotype|default:'—' }} / {{ record.sex|default:'—' }}</dd>
      <dt>Tissue / Assay</dt><dd>{{ record.tissue|default:'—' }} / {{ record.assay|default:'—' }}</dd>
      <dt>Version</dt><dd>{{ record.version|default:'—' }}</dd>
      <dt>Storage</dt><dd>{{ record.storage_location|default:'—' }}</dd>
      <dt>File_URL</dt><dd class="uri">{{ record.file_uri|default:'—' }}</dd>
      <dt>Checksum</dt><dd class="uri">{{ record.checksum|default:'—' }}</dd>
    </dl>
    <p>{{ record.notes|linebreaksbr }}</p>
  </section>
  <section class="card">
    <h2>Conditions</h2>
    {% for c in record.conditions.all %}<p><strong>{{ c.treatment }}</strong> · {{ c.dose }} · {{ c.timepoint }} · {{ c.cohort }}</p>{% empty %}<p>No conditions recorded.</p>{% endfor %}
    {% if can_edit %}<details><summary>Add condition</summary><form method="post">{% csrf_token %}{{ condition_form.as_p }}<button class="primary">Save condition</button></form></details>{% endif %}
  </section>
</div>
{% if record.omics %}
<section class="card">
  <h2>File checksums</h2>
  <p>MD5 values are stored declarations. Files have not been read or verified.</p>
  {% for item in record.file_checksums %}<p>{{ item.label }}: {{ item.file }} · {{ item.md5|default:'—' }} · {{ item.status }}</p>{% endfor %}
  {% if record.omics.Checksum %}<p>Legacy Checksum: {{ record.omics.Checksum }} · unverified; corresponding file unspecified.</p>{% endif %}
  <h2>Submission fields</h2>
  <dl class="submission-fields">{% for field,value in record.omics.items %}<dt>{% if field == 'File_uri' %}File_URL{% else %}{{ field }}{% endif %}</dt><dd class="uri">{{ value|default:'—' }}</dd>{% endfor %}</dl>
</section>
{% endif %}
{% include 'relationship_trees.html' %}
<section class="card">
  <div class="section-heading"><h2>Data lineage</h2><label>Depth <select id="depth"><option>1</option><option selected>2</option><option>3</option><option>4</option></select></label></div>
  <p class="muted">Arrows run from source to output. Click a node to open its record. Conditions above belong to this record.</p>
  <p id="graph-status" role="status"></p><div id="graph" data-endpoint="{{ lab_prefix }}/graph/{{ record.pk }}/"></div>
</section>
<section class="card downstream-output-box">
  <h2>Downstream outputs</h2>
  <p class="muted">Confirmed processed results for this data record.</p>
  {% for item in processed_outputs %}
  <article class="confirmed-processed-output">
    <h3>RNA-seq processed result{% if item.payload.normalization %} · {{ item.payload.normalization }}{% endif %}</h3>
    <p class="muted">Data name: {{ item.payload.data_name }} · Sample: {{ item.payload.sample_name }} · Confirmed {{ item.created_at }}</p>
    <div class="confirmed-processed-links">
      {% for key,url in item.payload.outputs.items %}<a href="{{ url }}" target="_blank" rel="noopener">Open {{ key|title }}</a>{% endfor %}
    </div>
  </article>
  {% endfor %}
  {% if outgoing %}<h3>Downstream data records</h3>{% for e in outgoing %}<p><a href="{{ lab_prefix }}/records/{{ e.target_id }}/">{{ e.target.name }}</a> · {{ e.get_relation_display }}</p>{% endfor %}{% endif %}
  {% if not processed_outputs and not outgoing %}<p>No confirmed downstream outputs recorded.</p>{% endif %}
</section>
<script src="{% static 'vendor/cytoscape.min.js' %}"></script><script src="{% static 'graph.js' %}"></script>
{% endblock %}