Information for 1-WGCAAACG (Motif 1)

C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G
Reverse Opposite:
A G T C T A C G A C G T A G C T C G A T A T C G A T G C C G T A
p-value:1e-11
log p-value:-2.635e+01
Information Content per bp:1.760
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif25.89%
Number of Background Sequences with motif9494.0
Percentage of Background Sequences with motif9.76%
Average Position of motif in Targets100.1 +/- 54.3bp
Average Position of motif in Background98.0 +/- 63.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU5F1/MA1115.2/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-WGCAAACG
ATGCAAA--
 A C G T C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G
T C G A G A C T C T A G A G T C G C T A C T G A G C T A A C G T A C G T

POU2F3/MA0627.3/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--WGCAAACG
TATGCAAAT-
 A C G T A C G T C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G
G C A T C G T A C A G T C A T G A G T C C G T A C G T A C G T A C G A T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----WGCAAACG----
NNTTTGCACACGGCCC
 A C G T A C G T A C G T A C G T C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G A C G T A C G T A C G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

Mesp1(bHLH)/ESC-Mesp1-ChIP-Seq(GSE165102)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:WGCAAACG--
RVCAAATGGY
 C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G A C G T A C G T
T C G A T G A C A G T C C G T A C T G A T G C A G C A T A C T G A C T G A G C T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------WGCAAACG--
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:WGCAAACG---
-CCAGACRSVB
 C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G A C G T A C G T A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---WGCAAACG
ATATGCAAAT-
 A C G T A C G T A C G T C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---WGCAAACG
TTATGCAAAT-
 A C G T A C G T A C G T C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--WGCAAACG
TATGCAAATC
 A C G T A C G T C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G
G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C

BARHL1/MA0877.4/Jaspar

Match Rank:10
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:WGCAAACG
--TAAACG
 C G A T T A C G A T G C G C T A C T G A C G T A A T G C T C A G
A C G T A C G T G C A T C G T A C T G A C G T A G A T C C A T G