Information for 2-CGCTTAGC (Motif 2)

T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C
Reverse Opposite:
A C T G A T G C A G C T C G T A G T C A A T C G G A T C A T C G
p-value:1e-10
log p-value:-2.353e+01
Information Content per bp:1.799
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif13.84%
Number of Background Sequences with motif3342.9
Percentage of Background Sequences with motif3.43%
Average Position of motif in Targets82.4 +/- 48.1bp
Average Position of motif in Background98.3 +/- 61.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-1/MA0124.3/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGCTTAGC
CCACTTA--
 A C G T T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C
T A G C A G T C G C T A G T A C A G C T A G C T G C T A A C G T A C G T

BARHL1/MA0877.4/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGCTTAGC
CGTTTA--
 T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C
G T A C C T A G G C A T A G C T G C A T C G T A A C G T A C G T

NFIC/MA0161.3/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CGCTTAGC-
--CTTGGCA
 T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C A C G T
A C G T A C G T T G A C A C G T G C A T T C A G C A T G G A T C C G T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CGCTTAGC
BCMATTAG-
 A C G T T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

BARHL2/MA0635.2/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGCTTAGC
CGTTTA--
 T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C
G A T C C T A G G C A T A C G T C G A T C G T A A C G T A C G T

ZNF682/MA1599.2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGCTTAGC-
GGGGCTTGGCC
 A C G T A C G T T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C A C G T
C A T G A T C G T C A G C T A G T A G C A C G T A C G T T C A G A T C G A G T C G A T C

ISL2/MA0914.2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCTTAGC
CACTTA--
 T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C
G A T C G C T A G T A C C G A T G A C T G C T A A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CGCTTAGC------
CCGCATAGCAACGGA
 A C G T T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

VENTX/MA0724.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CGCTTAGC
ACCGATTAG-
 A C G T A C G T T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T

Nkx3-2/MA0122.4/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGCTTAGC
AACCACTTAA-
 A C G T A C G T A C G T T A G C C T A G A T G C A C G T C G A T T C G A A T C G G T A C
C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A A C G T