Information for 4-TTAATGAC (Motif 3)

A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C
Reverse Opposite:
C T A G G C A T T G A C G C T A C A G T A G C T C T G A T C G A
p-value:1e-8
log p-value:-1.930e+01
Information Content per bp:1.618
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif32.14%
Number of Background Sequences with motif15882.0
Percentage of Background Sequences with motif16.32%
Average Position of motif in Targets102.2 +/- 56.1bp
Average Position of motif in Background98.6 +/- 63.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX6-3/MA1530.2/Jaspar

Match Rank:1
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:TTAATGAC
TTAATGAN
 A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C
C G A T A G C T C T G A C G T A A C G T T C A G C T G A A T C G

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----TTAATGAC----
NNAATTAATGACCNNN
 A C G T A C G T A C G T A C G T A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C A C G T A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

HOXA4/MA1496.2/Jaspar

Match Rank:3
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:TTAATGAC
-TAATGAC
 A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C
A C G T A G C T T C G A G T C A A G C T A C T G C T G A A G T C

HOXB4/MA1499.2/Jaspar

Match Rank:4
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:TTAATGAC
-TAATGA-
 A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C
A C G T A G C T G T C A C G T A A G C T A C T G C T G A A C G T

NKX6-1/MA0674.2/Jaspar

Match Rank:5
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TTAATGAC
TTAATTA-
 A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C
C G A T A G C T C G T A C G T A C A G T C A G T C T G A A C G T

HOXC4/MA1504.2/Jaspar

Match Rank:6
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:TTAATGAC
-TAATGA-
 A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C
A C G T A G C T C G T A C G T A A G C T A C T G C T G A A C G T

HOXD4/MA1507.2/Jaspar

Match Rank:7
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:TTAATGAC
-TAATGA-
 A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C
A C G T A G C T C G T A C G T A A G C T A C T G C T G A A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-TTAATGAC
GKTAATGR-
 A C G T A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T

POU6F1/MA1549.2/Jaspar

Match Rank:9
Score:0.83
Offset:1
Orientation:forward strand
Alignment:TTAATGAC
-TAATGAG
 A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C
A C G T G A C T T C G A C G T A A C G T A C T G G C T A A C T G

GSX2/MA0893.3/Jaspar

Match Rank:10
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:TTAATGAC
-TAATTAC
 A G C T G A C T T C G A G T C A C G A T A C T G C G T A G A T C
A C G T G A C T G T C A C T G A A G C T A C G T C T G A A T G C