Information for 12-AAGCSGCTTT (Motif 10)


Reverse Opposite:

p-value:1e-220
log p-value:-5.087e+02
Information Content per bp:1.530
Number of Target Sequences with motif7946.0
Percentage of Target Sequences with motif13.62%
Number of Background Sequences with motif5466.1
Percentage of Background Sequences with motif9.53%
Average Position of motif in Targets781.2 +/- 928.3bp
Average Position of motif in Background369.8 +/- 235.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0467.1_Crx/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGCSGCTTT-
AAGAGGATTAG

PH0126.1_Obox6/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAGCSGCTTT---
AAAAACGGATTATTG

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AAGCSGCTTT
----NGCTN-

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AAGCSGCTTT
CAGCTGNT--

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AAGCSGCTTT---
TCGTACCCGCATCATT

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AAGCSGCTTT-
NNAGCAGCTGCT

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AAGCSGCTTT
CAGCAGCTGN

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AAGCSGCTTT
BRRCVGTTDN

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AAGCSGCTTT-----
TGAACCGGATTAATGAA

MA0048.1_NHLH1/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AAGCSGCTTT
GCGCAGCTGCGT-