Information for 2-CCACYAGGGGGC (Motif 2)


Reverse Opposite:

p-value:1e-1084
log p-value:-2.498e+03
Information Content per bp:1.649
Number of Target Sequences with motif8941.0
Percentage of Target Sequences with motif15.32%
Number of Background Sequences with motif3922.9
Percentage of Background Sequences with motif6.84%
Average Position of motif in Targets506.8 +/- 670.1bp
Average Position of motif in Background365.2 +/- 216.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGGGGGC-------
GCCASCAGGGGGCGCYVNNG

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---CCACYAGGGGGC----
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.90
Offset:-3
Orientation:reverse strand
Alignment:---CCACYAGGGGGC-----
TGGCCACCAGGTGGCACTNT

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCACYAGGGGGC
CACAGCAGGGGG-

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCACYAGGGGGC------
-NNNAAGGGGGCGGGNNN

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CCACYAGGGGGC
----CAGATGGC

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCACYAGGGGGC
--AACAGATGGC

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGGGGGC-
CCCCCCCGGGGGNN

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGGGGGC-
NCCCCCCCGGGGGGN

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGGGGGC-
ACCCCCCCGGGGGGN