Information for 22-TTGGAATGACCC (Motif 25)


Reverse Opposite:

p-value:1e-68
log p-value:-1.581e+02
Information Content per bp:1.883
Number of Target Sequences with motif111.0
Percentage of Target Sequences with motif0.19%
Number of Background Sequences with motif11.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets508.7 +/- 566.4bp
Average Position of motif in Background448.4 +/- 279.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0101.1_REL/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTGGAATGACCC
--GGAAANCCCC

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTGGAATGACCC
--GGAAATCCCC

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTGGAATGACCC-
-GGGAAATCCCCN

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTGGAATGACCC------
--NNCNTGACCCCGCTCT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:TTGGAATGACCC
------TGACCT

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TTGGAATGACCC------
--NNNNTGACCCGGCGCG

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TTGGAATGACCC------
-TGTCGTGACCCCTTAAT

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTGGAATGACCC------
-NNANTTGACCCCTNNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTGGAATGACCC------
-NNNNTTGACCCCTNNNN

MA0107.1_RELA/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TTGGAATGACCC
--GGAAATTCCC