Information for 24-RTGTRGTCCTAA (Motif 27)


Reverse Opposite:

p-value:1e-64
log p-value:-1.486e+02
Information Content per bp:1.896
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets360.7 +/- 408.4bp
Average Position of motif in Background700.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:RTGTRGTCCTAA-----
-TAAAGTCGTAAAACGT

PH0066.1_Hoxc11/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RTGTRGTCCTAA-----
-TAAAGTCGTAAAATAG

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:RTGTRGTCCTAA-----
-TAAAGTCGTAAAACAT

PH0076.1_Hoxd11/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:RTGTRGTCCTAA------
-TAAGGTCGTAAAATCCT

PH0077.1_Hoxd12/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:RTGTRGTCCTAA------
-CAAGGTCGTAAAATCTT

PH0067.1_Hoxc12/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RTGTRGTCCTAA------
-TTAGGTCGTAAAATTTC

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----RTGTRGTCCTAA-
NNANTGGTGGTCTTNNN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--RTGTRGTCCTAA
NNHTGTGGTTWN--

PB0194.1_Zbtb12_2/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RTGTRGTCCTAA-----
--AGNGTTCTAATGANN

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RTGTRGTCCTAA
CGTGGGTGGTCC---