Information for 4-CCTTTGTTATBC (Motif 4)


Reverse Opposite:

p-value:1e-536
log p-value:-1.236e+03
Information Content per bp:1.688
Number of Target Sequences with motif10932.0
Percentage of Target Sequences with motif18.73%
Number of Background Sequences with motif6678.0
Percentage of Background Sequences with motif11.65%
Average Position of motif in Targets549.9 +/- 740.9bp
Average Position of motif in Background373.0 +/- 228.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTATBC
CCTTTGTT----

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTATBC
CCWTTGTY----

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTATBC
CCTTTGTTTT--

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTTATBC-
NNNTCCTTTGTTCTNNN

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTTATBC-
TNNTCCTTTGTTCTNNT

MA0515.1_Sox6/Jaspar

Match Rank:6
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTATBC
CCATTGTTTT--

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTATBC
CCWTTGTYYB--

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-CCTTTGTTATBC
NCCATTGTTC---

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTATBC
CCATTGTTNY--

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTATBC
YCTTTGTTCC--