Information for 7-CCTGCTGWGANH (Motif 7)


Reverse Opposite:

p-value:1e-344
log p-value:-7.923e+02
Information Content per bp:1.629
Number of Target Sequences with motif12430.0
Percentage of Target Sequences with motif21.30%
Number of Background Sequences with motif8669.1
Percentage of Background Sequences with motif15.12%
Average Position of motif in Targets550.4 +/- 702.9bp
Average Position of motif in Background375.1 +/- 214.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.95
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGWGANH
CCCCCTGCTGTG---

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.95
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGWGANH
TNTCCTGCTGTGNNG

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGWGANH
NNTCCTGCTGTGNNN

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGWGANH
TCNCCTGCTGNGNNN

MA0461.1_Atoh1/Jaspar

Match Rank:5
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCTGWGANH
GCCATCTG-----

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.74
Offset:3
Orientation:forward strand
Alignment:CCTGCTGWGANH
---GCTGTG---

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CCTGCTGWGANH
HCAGCTGDTN--

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCTGCTGWGANH
ANCAGCTG-----

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCTGWGANH
CAGCAGCTGN----

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCTGCTGWGANH
--TGCTGACTCA