| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-72 | -1.678e+02 | 0.0000 | 389.0 | 33.33% | 6145.8 | 12.75% | motif file (matrix) |
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| 2 |  | Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-39 | -9.082e+01 | 0.0000 | 334.0 | 28.62% | 6612.0 | 13.72% | motif file (matrix) |
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| 3 |  | Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer | 1e-27 | -6.315e+01 | 0.0000 | 280.0 | 23.99% | 5929.3 | 12.30% | motif file (matrix) |
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| 4 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-19 | -4.541e+01 | 0.0000 | 87.0 | 7.46% | 1129.6 | 2.34% | motif file (matrix) |
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| 5 |  | Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-18 | -4.327e+01 | 0.0000 | 648.0 | 55.53% | 20446.8 | 42.42% | motif file (matrix) |
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| 6 |  | Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-13 | -3.210e+01 | 0.0000 | 899.0 | 77.04% | 32191.8 | 66.79% | motif file (matrix) |
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| 7 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-13 | -3.129e+01 | 0.0000 | 173.0 | 14.82% | 3926.0 | 8.15% | motif file (matrix) |
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| 8 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-13 | -3.119e+01 | 0.0000 | 274.0 | 23.48% | 7260.0 | 15.06% | motif file (matrix) |
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| 9 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-12 | -2.823e+01 | 0.0000 | 304.0 | 26.05% | 8504.5 | 17.65% | motif file (matrix) |
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| 10 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-11 | -2.674e+01 | 0.0000 | 131.0 | 11.23% | 2835.2 | 5.88% | motif file (matrix) |
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| 11 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-11 | -2.658e+01 | 0.0000 | 326.0 | 27.93% | 9413.9 | 19.53% | motif file (matrix) |
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| 12 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-9 | -2.172e+01 | 0.0000 | 294.0 | 25.19% | 8638.0 | 17.92% | motif file (matrix) |
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| 13 |  | Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-7 | -1.756e+01 | 0.0000 | 730.0 | 62.55% | 26318.7 | 54.61% | motif file (matrix) |
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| 14 |  | Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-7 | -1.660e+01 | 0.0000 | 414.0 | 35.48% | 13644.0 | 28.31% | motif file (matrix) |
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| 15 |  | Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.420e+01 | 0.0000 | 230.0 | 19.71% | 6977.2 | 14.48% | motif file (matrix) |
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| 16 |  | Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.406e+01 | 0.0000 | 554.0 | 47.47% | 19510.0 | 40.48% | motif file (matrix) |
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| 17 |  | Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-4 | -1.136e+01 | 0.0002 | 117.0 | 10.03% | 3225.2 | 6.69% | motif file (matrix) |
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| 18 |  | Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.134e+01 | 0.0002 | 111.0 | 9.51% | 3022.4 | 6.27% | motif file (matrix) |
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| 19 |  | CHR(?)/Hela-CellCycle-Expression/Homer | 1e-4 | -1.124e+01 | 0.0002 | 279.0 | 23.91% | 9112.5 | 18.91% | motif file (matrix) |
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| 20 |  | Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-4 | -1.072e+01 | 0.0003 | 511.0 | 43.79% | 18264.9 | 37.90% | motif file (matrix) |
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| 21 |  | Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer | 1e-4 | -9.545e+00 | 0.0009 | 139.0 | 11.91% | 4143.0 | 8.60% | motif file (matrix) |
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| 22 |  | MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.562e+00 | 0.0062 | 118.0 | 10.11% | 3584.1 | 7.44% | motif file (matrix) |
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| 23 |  | PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-3 | -7.533e+00 | 0.0062 | 41.0 | 3.51% | 966.9 | 2.01% | motif file (matrix) |
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| 24 |  | CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.081e+00 | 0.0092 | 240.0 | 20.57% | 8188.6 | 16.99% | motif file (matrix) |
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| 25 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.341e+00 | 0.0186 | 255.0 | 21.85% | 8883.2 | 18.43% | motif file (matrix) |
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| 26 |  | MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -6.275e+00 | 0.0191 | 237.0 | 20.31% | 8199.1 | 17.01% | motif file (matrix) |
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| 27 |  | Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-2 | -6.033e+00 | 0.0235 | 85.0 | 7.28% | 2557.9 | 5.31% | motif file (matrix) |
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| 28 |  | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-2 | -5.576e+00 | 0.0357 | 222.0 | 19.02% | 7737.2 | 16.05% | motif file (matrix) |
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| 29 |  | Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.448e+00 | 0.0392 | 78.0 | 6.68% | 2365.4 | 4.91% | motif file (matrix) |
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| 30 |  | MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-2 | -5.427e+00 | 0.0392 | 288.0 | 24.68% | 10334.7 | 21.44% | motif file (matrix) |
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| 31 |  | STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer | 1e-2 | -5.084e+00 | 0.0527 | 218.0 | 18.68% | 7668.1 | 15.91% | motif file (matrix) |
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| 32 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-2 | -4.816e+00 | 0.0668 | 77.0 | 6.60% | 2394.5 | 4.97% | motif file (matrix) |
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