Homer de novo Motif Results (2a_Sal_RUVrk3/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 1167
Total background sequences = 48192
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-164	-3.794e+02	76.44%	37.04%	188.2bp (176.7bp)	Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer(0.914) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-48	-1.122e+02	35.65%	17.53%	201.7bp (183.3bp)	MA0052.2_MEF2A/Jaspar(0.937) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-27	-6.392e+01	15.60%	6.36%	201.2bp (191.1bp)	MA0025.1_NFIL3/Jaspar(0.916) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-27	-6.311e+01	40.27%	25.57%	203.8bp (183.6bp)	Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer(0.930) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-23	-5.487e+01	32.82%	20.10%	214.2bp (195.7bp)	POL010.1_DCE_S_III/Jaspar(0.695) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-22	-5.083e+01	29.65%	17.89%	207.3bp (185.5bp)	MA0491.1_JUND/Jaspar(0.976) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-21	-4.840e+01	37.19%	24.60%	209.3bp (187.5bp)	PB0169.1_Sox15_2/Jaspar(0.743) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-19	-4.422e+01	29.48%	18.48%	189.3bp (186.6bp)	PB0171.1_Sox18_2/Jaspar(0.659) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-19	-4.378e+01	17.05%	8.71%	180.6bp (182.1bp)	Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer(0.680) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-17	-4.112e+01	28.71%	18.20%	191.3bp (186.3bp)	PB0203.1_Zfp691_2/Jaspar(0.598) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-16	-3.685e+01	47.56%	35.76%	223.5bp (185.3bp)	Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer(0.654) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-15	-3.516e+01	39.76%	28.76%	210.8bp (186.0bp)	Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer(0.724) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-15	-3.471e+01	6.34%	2.16%	226.9bp (185.7bp)	Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer(0.675) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-14	-3.409e+01	32.31%	22.23%	211.6bp (191.3bp)	POL002.1_INR/Jaspar(0.679) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-14	-3.348e+01	5.48%	1.73%	182.5bp (185.3bp)	PB0143.1_Klf7_2/Jaspar(0.705) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-14	-3.301e+01	46.27%	35.20%	234.1bp (185.7bp)	POL008.1_DCE_S_I/Jaspar(0.728) More Information \| Similar Motifs Found	motif file (matrix)
17		1e-13	-3.126e+01	2.83%	0.53%	221.6bp (189.6bp)	Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer(0.779) More Information \| Similar Motifs Found	motif file (matrix)
18 *		1e-11	-2.738e+01	20.05%	12.71%	226.7bp (190.8bp)	PB0091.1_Zbtb3_1/Jaspar(0.755) More Information \| Similar Motifs Found	motif file (matrix)
19 *		1e-11	-2.535e+01	11.57%	6.26%	181.1bp (184.7bp)	MA0518.1_Stat4/Jaspar(0.704) More Information \| Similar Motifs Found	motif file (matrix)
20 *		1e-8	-2.042e+01	1.54%	0.24%	227.3bp (213.4bp)	MA0117.1_Mafb/Jaspar(0.672) More Information \| Similar Motifs Found	motif file (matrix)
21 *		1e-8	-1.847e+01	3.86%	1.46%	216.3bp (188.7bp)	HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer(0.630) More Information \| Similar Motifs Found	motif file (matrix)
22 *		1e-6	-1.533e+01	0.34%	0.01%	135.9bp (165.4bp)	PB0097.1_Zfp281_1/Jaspar(0.609) More Information \| Similar Motifs Found	motif file (matrix)
23 *		1e-5	-1.297e+01	0.26%	0.00%	116.7bp (0.0bp)	MA0122.1_Nkx3-2/Jaspar(0.576) More Information \| Similar Motifs Found	motif file (matrix)
24 *		1e-5	-1.222e+01	11.05%	7.41%	223.0bp (184.5bp)	PH0086.1_Irx5/Jaspar(0.645) More Information \| Similar Motifs Found	motif file (matrix)
25 *		1e-2	-6.574e+00	0.43%	0.07%	133.5bp (195.3bp)	MA0057.1_MZF1_5-13/Jaspar(0.617) More Information \| Similar Motifs Found	motif file (matrix)
26 *		1e-1	-3.851e+00	0.26%	0.05%	119.9bp (183.1bp)	Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer(0.652) More Information \| Similar Motifs Found	motif file (matrix)
27 *		1e-1	-3.733e+00	0.09%	0.00%	127.7bp (76.2bp)	MA0157.1_FOXO3/Jaspar(0.645) More Information \| Similar Motifs Found	motif file (matrix)
28 *		1e-1	-3.052e+00	0.09%	0.01%	129.7bp (60.6bp)	Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer(0.768) More Information \| Similar Motifs Found	motif file (matrix)