| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-197 | -4.552e+02 | 0.0000 | 1266.0 | 24.44% | 4386.9 | 9.95% | motif file (matrix) |
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| 2 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-197 | -4.541e+02 | 0.0000 | 1771.0 | 34.20% | 7470.0 | 16.94% | motif file (matrix) |
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| 3 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-193 | -4.448e+02 | 0.0000 | 1968.0 | 38.00% | 8846.4 | 20.07% | motif file (matrix) |
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| 4 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-180 | -4.157e+02 | 0.0000 | 1011.0 | 19.52% | 3187.6 | 7.23% | motif file (matrix) |
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| 5 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-176 | -4.062e+02 | 0.0000 | 1929.0 | 37.25% | 8881.8 | 20.15% | motif file (matrix) |
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| 6 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-166 | -3.830e+02 | 0.0000 | 2053.0 | 39.64% | 9938.1 | 22.54% | motif file (matrix) |
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| 7 |  | Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-153 | -3.531e+02 | 0.0000 | 2771.0 | 53.50% | 15643.6 | 35.48% | motif file (matrix) |
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| 8 |  | Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-125 | -2.879e+02 | 0.0000 | 1341.0 | 25.89% | 5918.7 | 13.43% | motif file (matrix) |
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| 9 |  | Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-120 | -2.773e+02 | 0.0000 | 3868.0 | 74.69% | 26092.0 | 59.19% | motif file (matrix) |
pdf |
| 10 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-119 | -2.752e+02 | 0.0000 | 1709.0 | 33.00% | 8506.1 | 19.29% | motif file (matrix) |
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| 11 |  | Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer | 1e-113 | -2.608e+02 | 0.0000 | 1230.0 | 23.75% | 5421.2 | 12.30% | motif file (matrix) |
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| 12 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-106 | -2.463e+02 | 0.0000 | 442.0 | 8.53% | 1093.6 | 2.48% | motif file (matrix) |
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| 13 |  | NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-105 | -2.439e+02 | 0.0000 | 2246.0 | 43.37% | 12791.4 | 29.02% | motif file (matrix) |
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| 14 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-104 | -2.411e+02 | 0.0000 | 480.0 | 9.27% | 1284.8 | 2.91% | motif file (matrix) |
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| 15 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-84 | -1.955e+02 | 0.0000 | 697.0 | 13.46% | 2649.0 | 6.01% | motif file (matrix) |
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| 16 |  | X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-83 | -1.916e+02 | 0.0000 | 497.0 | 9.60% | 1580.6 | 3.59% | motif file (matrix) |
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| 17 |  | Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-71 | -1.641e+02 | 0.0000 | 710.0 | 13.71% | 2944.9 | 6.68% | motif file (matrix) |
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| 18 |  | Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-70 | -1.613e+02 | 0.0000 | 2994.0 | 57.81% | 20055.8 | 45.49% | motif file (matrix) |
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| 19 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-57 | -1.327e+02 | 0.0000 | 454.0 | 8.77% | 1674.5 | 3.80% | motif file (matrix) |
pdf |
| 20 |  | NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-41 | -9.622e+01 | 0.0000 | 3032.0 | 58.54% | 21643.3 | 49.09% | motif file (matrix) |
pdf |
| 21 |  | SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-33 | -7.774e+01 | 0.0000 | 4907.0 | 94.75% | 39715.8 | 90.09% | motif file (matrix) |
pdf |
| 22 |  | NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-24 | -5.564e+01 | 0.0000 | 203.0 | 3.92% | 771.8 | 1.75% | motif file (matrix) |
pdf |
| 23 |  | Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-21 | -4.871e+01 | 0.0000 | 3964.0 | 76.54% | 31133.4 | 70.62% | motif file (matrix) |
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| 24 |  | Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-18 | -4.216e+01 | 0.0000 | 1819.0 | 35.12% | 12971.5 | 29.42% | motif file (matrix) |
pdf |
| 25 |  | Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-18 | -4.196e+01 | 0.0000 | 550.0 | 10.62% | 3190.4 | 7.24% | motif file (matrix) |
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| 26 |  | Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-18 | -4.185e+01 | 0.0000 | 1973.0 | 38.10% | 14234.6 | 32.29% | motif file (matrix) |
pdf |
| 27 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-17 | -4.080e+01 | 0.0000 | 965.0 | 18.63% | 6279.8 | 14.24% | motif file (matrix) |
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| 28 |  | MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-17 | -4.020e+01 | 0.0000 | 1541.0 | 29.75% | 10794.5 | 24.49% | motif file (matrix) |
pdf |
| 29 |  | CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-16 | -3.881e+01 | 0.0000 | 1403.0 | 27.09% | 9737.7 | 22.09% | motif file (matrix) |
pdf |
| 30 |  | Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-15 | -3.663e+01 | 0.0000 | 179.0 | 3.46% | 775.5 | 1.76% | motif file (matrix) |
pdf |
| 31 |  | Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-15 | -3.571e+01 | 0.0000 | 959.0 | 18.52% | 6357.6 | 14.42% | motif file (matrix) |
pdf |
| 32 |  | Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-14 | -3.298e+01 | 0.0000 | 3350.0 | 64.68% | 26200.3 | 59.43% | motif file (matrix) |
pdf |
| 33 |  | CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-14 | -3.275e+01 | 0.0000 | 1134.0 | 21.90% | 7794.7 | 17.68% | motif file (matrix) |
pdf |
| 34 |  | PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer | 1e-13 | -3.204e+01 | 0.0000 | 915.0 | 17.67% | 6114.3 | 13.87% | motif file (matrix) |
pdf |
| 35 |  | NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer | 1e-13 | -3.143e+01 | 0.0000 | 1600.0 | 30.89% | 11547.4 | 26.19% | motif file (matrix) |
pdf |
| 36 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-13 | -3.133e+01 | 0.0000 | 583.0 | 11.26% | 3627.1 | 8.23% | motif file (matrix) |
pdf |
| 37 |  | Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-13 | -3.118e+01 | 0.0000 | 1399.0 | 27.01% | 9940.3 | 22.55% | motif file (matrix) |
pdf |
| 38 |  | Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-12 | -2.951e+01 | 0.0000 | 147.0 | 2.84% | 644.5 | 1.46% | motif file (matrix) |
pdf |
| 39 |  | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-12 | -2.879e+01 | 0.0000 | 1136.0 | 21.93% | 7929.7 | 17.99% | motif file (matrix) |
pdf |
| 40 |  | STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-11 | -2.752e+01 | 0.0000 | 1789.0 | 34.54% | 13228.3 | 30.01% | motif file (matrix) |
pdf |
| 41 |  | RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-11 | -2.580e+01 | 0.0000 | 768.0 | 14.83% | 5153.3 | 11.69% | motif file (matrix) |
pdf |
| 42 |  | Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-10 | -2.448e+01 | 0.0000 | 908.0 | 17.53% | 6276.0 | 14.24% | motif file (matrix) |
pdf |
| 43 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer | 1e-10 | -2.417e+01 | 0.0000 | 3144.0 | 60.71% | 24781.3 | 56.21% | motif file (matrix) |
pdf |
| 44 |  | MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-10 | -2.335e+01 | 0.0000 | 1918.0 | 37.03% | 14460.5 | 32.80% | motif file (matrix) |
pdf |
| 45 |  | NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer | 1e-9 | -2.183e+01 | 0.0000 | 392.0 | 7.57% | 2425.8 | 5.50% | motif file (matrix) |
pdf |
| 46 |  | Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-9 | -2.171e+01 | 0.0000 | 592.0 | 11.43% | 3920.6 | 8.89% | motif file (matrix) |
pdf |
| 47 |  | Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-9 | -2.131e+01 | 0.0000 | 2645.0 | 51.07% | 20646.2 | 46.83% | motif file (matrix) |
pdf |
| 48 |  | NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-9 | -2.102e+01 | 0.0000 | 726.0 | 14.02% | 4967.4 | 11.27% | motif file (matrix) |
pdf |
| 49 |  | Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-8 | -1.940e+01 | 0.0000 | 2270.0 | 43.83% | 17577.8 | 39.87% | motif file (matrix) |
pdf |
| 50 |  | ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer | 1e-7 | -1.791e+01 | 0.0000 | 255.0 | 4.92% | 1513.1 | 3.43% | motif file (matrix) |
pdf |
| 51 |  | AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-7 | -1.688e+01 | 0.0000 | 4641.0 | 89.61% | 38438.3 | 87.19% | motif file (matrix) |
pdf |
| 52 |  | E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-7 | -1.633e+01 | 0.0000 | 2402.0 | 46.38% | 18850.5 | 42.76% | motif file (matrix) |
pdf |
| 53 |  | STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer | 1e-7 | -1.621e+01 | 0.0000 | 706.0 | 13.63% | 4967.6 | 11.27% | motif file (matrix) |
pdf |
| 54 |  | STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer | 1e-6 | -1.594e+01 | 0.0000 | 1067.0 | 20.60% | 7845.9 | 17.80% | motif file (matrix) |
pdf |
| 55 |  | Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-6 | -1.593e+01 | 0.0000 | 632.0 | 12.20% | 4400.0 | 9.98% | motif file (matrix) |
pdf |
| 56 |  | Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.568e+01 | 0.0000 | 2967.0 | 57.29% | 23692.0 | 53.74% | motif file (matrix) |
pdf |
| 57 |  | Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer | 1e-6 | -1.554e+01 | 0.0000 | 1387.0 | 26.78% | 10458.3 | 23.72% | motif file (matrix) |
pdf |
| 58 |  | MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-6 | -1.530e+01 | 0.0000 | 1600.0 | 30.89% | 12217.2 | 27.71% | motif file (matrix) |
pdf |
| 59 |  | Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-6 | -1.504e+01 | 0.0000 | 389.0 | 7.51% | 2562.9 | 5.81% | motif file (matrix) |
pdf |
| 60 |  | HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer | 1e-6 | -1.428e+01 | 0.0000 | 523.0 | 10.10% | 3608.1 | 8.18% | motif file (matrix) |
pdf |
| 61 |  | ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-6 | -1.418e+01 | 0.0000 | 2747.0 | 53.04% | 21901.8 | 49.68% | motif file (matrix) |
pdf |
| 62 |  | JunD(bZIP)/K562-JunD-ChIP-Seq/Homer | 1e-6 | -1.406e+01 | 0.0000 | 186.0 | 3.59% | 1093.2 | 2.48% | motif file (matrix) |
pdf |
| 63 |  | CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer | 1e-5 | -1.253e+01 | 0.0000 | 569.0 | 10.99% | 4026.9 | 9.13% | motif file (matrix) |
pdf |
| 64 |  | c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.220e+01 | 0.0000 | 570.0 | 11.01% | 4046.5 | 9.18% | motif file (matrix) |
pdf |
| 65 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-5 | -1.169e+01 | 0.0000 | 1507.0 | 29.10% | 11650.9 | 26.43% | motif file (matrix) |
pdf |
| 66 |  | CHR(?)/Hela-CellCycle-Expression/Homer | 1e-4 | -1.141e+01 | 0.0000 | 1110.0 | 21.43% | 8409.0 | 19.07% | motif file (matrix) |
pdf |
| 67 |  | Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-4 | -1.066e+01 | 0.0001 | 4112.0 | 79.40% | 33962.5 | 77.04% | motif file (matrix) |
pdf |
| 68 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-4 | -1.061e+01 | 0.0001 | 1178.0 | 22.75% | 9008.1 | 20.43% | motif file (matrix) |
pdf |
| 69 |  | Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.038e+01 | 0.0001 | 958.0 | 18.50% | 7228.1 | 16.40% | motif file (matrix) |
pdf |
| 70 |  | HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.444e+00 | 0.0003 | 352.0 | 6.80% | 2446.3 | 5.55% | motif file (matrix) |
pdf |
| 71 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-4 | -9.237e+00 | 0.0004 | 1090.0 | 21.05% | 8368.5 | 18.98% | motif file (matrix) |
pdf |
| 72 |  | Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-3 | -8.903e+00 | 0.0005 | 447.0 | 8.63% | 3207.9 | 7.28% | motif file (matrix) |
pdf |
| 73 |  | CRE(bZIP)/Promoter/Homer | 1e-3 | -8.873e+00 | 0.0005 | 355.0 | 6.85% | 2489.2 | 5.65% | motif file (matrix) |
pdf |
| 74 |  | Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer | 1e-3 | -8.841e+00 | 0.0005 | 2714.0 | 52.40% | 21988.1 | 49.88% | motif file (matrix) |
pdf |
| 75 |  | TATA-Box(TBP)/Promoter/Homer | 1e-3 | -8.782e+00 | 0.0005 | 2261.0 | 43.66% | 18151.1 | 41.17% | motif file (matrix) |
pdf |
| 76 |  | GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer | 1e-3 | -8.531e+00 | 0.0007 | 555.0 | 10.72% | 4079.0 | 9.25% | motif file (matrix) |
pdf |
| 77 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer | 1e-3 | -8.260e+00 | 0.0009 | 1188.0 | 22.94% | 9234.5 | 20.95% | motif file (matrix) |
pdf |
| 78 |  | STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer | 1e-3 | -8.014e+00 | 0.0011 | 574.0 | 11.08% | 4254.1 | 9.65% | motif file (matrix) |
pdf |
| 79 |  | MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.560e+00 | 0.0017 | 468.0 | 9.04% | 3430.9 | 7.78% | motif file (matrix) |
pdf |
| 80 |  | TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-3 | -6.965e+00 | 0.0031 | 953.0 | 18.40% | 7389.3 | 16.76% | motif file (matrix) |
pdf |
| 81 |  | ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -6.329e+00 | 0.0058 | 185.0 | 3.57% | 1263.4 | 2.87% | motif file (matrix) |
pdf |
| 82 |  | EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.325e+00 | 0.0058 | 1364.0 | 26.34% | 10833.8 | 24.57% | motif file (matrix) |
pdf |
| 83 |  | PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-2 | -5.991e+00 | 0.0080 | 397.0 | 7.67% | 2938.9 | 6.67% | motif file (matrix) |
pdf |
| 84 |  | CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -5.983e+00 | 0.0080 | 251.0 | 4.85% | 1785.9 | 4.05% | motif file (matrix) |
pdf |
| 85 |  | AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer | 1e-2 | -5.827e+00 | 0.0092 | 2519.0 | 48.64% | 20596.4 | 46.72% | motif file (matrix) |
pdf |
| 86 |  | GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.648e+00 | 0.0108 | 270.0 | 5.21% | 1947.7 | 4.42% | motif file (matrix) |
pdf |
| 87 |  | BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-2 | -5.434e+00 | 0.0132 | 2425.0 | 46.82% | 19838.3 | 45.00% | motif file (matrix) |
pdf |
| 88 |  | Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer | 1e-2 | -5.341e+00 | 0.0144 | 2319.0 | 44.78% | 18949.4 | 42.98% | motif file (matrix) |
pdf |
| 89 |  | OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.109e+00 | 0.0179 | 347.0 | 6.70% | 2582.5 | 5.86% | motif file (matrix) |
pdf |
| 90 |  | ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -4.794e+00 | 0.0243 | 1894.0 | 36.57% | 15416.4 | 34.97% | motif file (matrix) |
pdf |
| 91 |  | RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer | 1e-2 | -4.650e+00 | 0.0277 | 246.0 | 4.75% | 1800.8 | 4.08% | motif file (matrix) |
pdf |