| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-81 | -1.883e+02 | 0.0000 | 556.0 | 21.76% | 4282.6 | 9.11% | motif file (matrix) |
pdf |
| 2 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-81 | -1.880e+02 | 0.0000 | 451.0 | 17.65% | 3046.6 | 6.48% | motif file (matrix) |
pdf |
| 3 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-75 | -1.739e+02 | 0.0000 | 774.0 | 30.29% | 7381.8 | 15.69% | motif file (matrix) |
pdf |
| 4 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-71 | -1.637e+02 | 0.0000 | 860.0 | 33.66% | 8806.3 | 18.72% | motif file (matrix) |
pdf |
| 5 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-67 | -1.559e+02 | 0.0000 | 855.0 | 33.46% | 8880.2 | 18.88% | motif file (matrix) |
pdf |
| 6 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-64 | -1.482e+02 | 0.0000 | 900.0 | 35.23% | 9713.2 | 20.65% | motif file (matrix) |
pdf |
| 7 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-33 | -7.712e+01 | 0.0000 | 296.0 | 11.59% | 2528.8 | 5.38% | motif file (matrix) |
pdf |
| 8 |  | NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-31 | -7.249e+01 | 0.0000 | 449.0 | 17.57% | 4675.8 | 9.94% | motif file (matrix) |
pdf |
| 9 |  | NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-29 | -6.899e+01 | 0.0000 | 1439.0 | 56.32% | 21160.8 | 44.99% | motif file (matrix) |
pdf |
| 10 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-25 | -5.923e+01 | 0.0000 | 637.0 | 24.93% | 7841.0 | 16.67% | motif file (matrix) |
pdf |
| 11 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-24 | -5.568e+01 | 0.0000 | 154.0 | 6.03% | 1107.1 | 2.35% | motif file (matrix) |
pdf |
| 12 |  | X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-21 | -5.024e+01 | 0.0000 | 176.0 | 6.89% | 1434.2 | 3.05% | motif file (matrix) |
pdf |
| 13 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-21 | -4.928e+01 | 0.0000 | 138.0 | 5.40% | 1000.4 | 2.13% | motif file (matrix) |
pdf |
| 14 |  | Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-17 | -4.125e+01 | 0.0000 | 1388.0 | 54.32% | 21483.3 | 45.68% | motif file (matrix) |
pdf |
| 15 |  | Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-17 | -4.095e+01 | 0.0000 | 898.0 | 35.15% | 12822.3 | 27.26% | motif file (matrix) |
pdf |
| 16 |  | Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-16 | -3.903e+01 | 0.0000 | 255.0 | 9.98% | 2677.2 | 5.69% | motif file (matrix) |
pdf |
| 17 |  | Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-16 | -3.864e+01 | 0.0000 | 1483.0 | 58.04% | 23375.0 | 49.70% | motif file (matrix) |
pdf |
| 18 |  | Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer | 1e-16 | -3.740e+01 | 0.0000 | 450.0 | 17.61% | 5624.5 | 11.96% | motif file (matrix) |
pdf |
| 19 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-15 | -3.481e+01 | 0.0000 | 991.0 | 38.79% | 14728.8 | 31.31% | motif file (matrix) |
pdf |
| 20 |  | NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-14 | -3.439e+01 | 0.0000 | 101.0 | 3.95% | 757.0 | 1.61% | motif file (matrix) |
pdf |
| 21 |  | Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-13 | -3.166e+01 | 0.0000 | 1397.0 | 54.68% | 22185.6 | 47.17% | motif file (matrix) |
pdf |
| 22 |  | Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-13 | -3.135e+01 | 0.0000 | 455.0 | 17.81% | 5920.2 | 12.59% | motif file (matrix) |
pdf |
| 23 |  | CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-13 | -3.075e+01 | 0.0000 | 591.0 | 23.13% | 8142.9 | 17.31% | motif file (matrix) |
pdf |
| 24 |  | GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer | 1e-13 | -3.051e+01 | 0.0000 | 316.0 | 12.37% | 3795.0 | 8.07% | motif file (matrix) |
pdf |
| 25 |  | Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-12 | -2.982e+01 | 0.0000 | 93.0 | 3.64% | 721.5 | 1.53% | motif file (matrix) |
pdf |
| 26 |  | Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-10 | -2.530e+01 | 0.0000 | 457.0 | 17.89% | 6200.6 | 13.18% | motif file (matrix) |
pdf |
| 27 |  | Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-10 | -2.514e+01 | 0.0000 | 80.0 | 3.13% | 630.2 | 1.34% | motif file (matrix) |
pdf |
| 28 |  | Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-9 | -2.286e+01 | 0.0000 | 809.0 | 31.66% | 12243.2 | 26.03% | motif file (matrix) |
pdf |
| 29 |  | MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-9 | -2.119e+01 | 0.0000 | 672.0 | 26.30% | 9990.2 | 21.24% | motif file (matrix) |
pdf |
| 30 |  | GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer | 1e-8 | -2.054e+01 | 0.0000 | 189.0 | 7.40% | 2205.5 | 4.69% | motif file (matrix) |
pdf |
| 31 |  | Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-8 | -1.995e+01 | 0.0000 | 787.0 | 30.80% | 12047.5 | 25.61% | motif file (matrix) |
pdf |
| 32 |  | Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer | 1e-8 | -1.906e+01 | 0.0000 | 674.0 | 26.38% | 10155.0 | 21.59% | motif file (matrix) |
pdf |
| 33 |  | Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-7 | -1.812e+01 | 0.0000 | 940.0 | 36.79% | 14859.5 | 31.59% | motif file (matrix) |
pdf |
| 34 |  | PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer | 1e-7 | -1.710e+01 | 0.0000 | 1732.0 | 67.79% | 29478.5 | 62.67% | motif file (matrix) |
pdf |
| 35 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-6 | -1.573e+01 | 0.0000 | 261.0 | 10.22% | 3483.7 | 7.41% | motif file (matrix) |
pdf |
| 36 |  | Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-6 | -1.459e+01 | 0.0000 | 604.0 | 23.64% | 9253.7 | 19.67% | motif file (matrix) |
pdf |
| 37 |  | MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-6 | -1.435e+01 | 0.0000 | 742.0 | 29.04% | 11664.3 | 24.80% | motif file (matrix) |
pdf |
| 38 |  | Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.287e+01 | 0.0000 | 455.0 | 17.81% | 6831.2 | 14.52% | motif file (matrix) |
pdf |
| 39 |  | STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-5 | -1.231e+01 | 0.0000 | 822.0 | 32.17% | 13241.4 | 28.15% | motif file (matrix) |
pdf |
| 40 |  | MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-5 | -1.211e+01 | 0.0000 | 840.0 | 32.88% | 13578.6 | 28.87% | motif file (matrix) |
pdf |
| 41 |  | Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-5 | -1.183e+01 | 0.0000 | 465.0 | 18.20% | 7072.1 | 15.04% | motif file (matrix) |
pdf |
| 42 |  | Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-4 | -1.063e+01 | 0.0002 | 1446.0 | 56.59% | 24725.8 | 52.57% | motif file (matrix) |
pdf |
| 43 |  | PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.029e+01 | 0.0002 | 492.0 | 19.26% | 7650.2 | 16.27% | motif file (matrix) |
pdf |
| 44 |  | NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer | 1e-4 | -1.007e+01 | 0.0003 | 729.0 | 28.53% | 11804.5 | 25.10% | motif file (matrix) |
pdf |
| 45 |  | Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.002e+01 | 0.0003 | 434.0 | 16.99% | 6677.4 | 14.20% | motif file (matrix) |
pdf |
| 46 |  | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-4 | -1.001e+01 | 0.0003 | 510.0 | 19.96% | 7983.1 | 16.97% | motif file (matrix) |
pdf |
| 47 |  | Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-4 | -9.820e+00 | 0.0003 | 224.0 | 8.77% | 3175.5 | 6.75% | motif file (matrix) |
pdf |
| 48 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-4 | -9.287e+00 | 0.0005 | 111.0 | 4.34% | 1406.4 | 2.99% | motif file (matrix) |
pdf |
| 49 |  | Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer | 1e-3 | -8.986e+00 | 0.0007 | 314.0 | 12.29% | 4718.8 | 10.03% | motif file (matrix) |
pdf |
| 50 |  | Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-3 | -8.949e+00 | 0.0007 | 783.0 | 30.65% | 12873.5 | 27.37% | motif file (matrix) |
pdf |
| 51 |  | Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.539e+00 | 0.0010 | 285.0 | 11.15% | 4262.2 | 9.06% | motif file (matrix) |
pdf |
| 52 |  | Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-3 | -8.371e+00 | 0.0012 | 1257.0 | 49.20% | 21506.0 | 45.72% | motif file (matrix) |
pdf |
| 53 |  | Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-3 | -8.371e+00 | 0.0012 | 992.0 | 38.83% | 16684.8 | 35.47% | motif file (matrix) |
pdf |
| 54 |  | Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer | 1e-3 | -8.278e+00 | 0.0012 | 569.0 | 22.27% | 9164.9 | 19.49% | motif file (matrix) |
pdf |
| 55 |  | STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer | 1e-3 | -8.206e+00 | 0.0013 | 323.0 | 12.64% | 4927.0 | 10.48% | motif file (matrix) |
pdf |
| 56 |  | CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer | 1e-3 | -8.108e+00 | 0.0014 | 256.0 | 10.02% | 3806.2 | 8.09% | motif file (matrix) |
pdf |
| 57 |  | Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-3 | -8.097e+00 | 0.0014 | 1119.0 | 43.80% | 19019.1 | 40.44% | motif file (matrix) |
pdf |
| 58 |  | PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-3 | -7.951e+00 | 0.0016 | 208.0 | 8.14% | 3020.5 | 6.42% | motif file (matrix) |
pdf |
| 59 |  | NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-3 | -7.746e+00 | 0.0019 | 735.0 | 28.77% | 12150.3 | 25.83% | motif file (matrix) |
pdf |
| 60 |  | CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-3 | -7.697e+00 | 0.0020 | 133.0 | 5.21% | 1817.6 | 3.86% | motif file (matrix) |
pdf |
| 61 |  | BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-3 | -7.671e+00 | 0.0020 | 1170.0 | 45.79% | 20002.4 | 42.53% | motif file (matrix) |
pdf |
| 62 |  | CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.606e+00 | 0.0021 | 600.0 | 23.48% | 9776.0 | 20.78% | motif file (matrix) |
pdf |
| 63 |  | IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer | 1e-3 | -7.552e+00 | 0.0022 | 98.0 | 3.84% | 1273.7 | 2.71% | motif file (matrix) |
pdf |
| 64 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.228e+00 | 0.0030 | 464.0 | 18.16% | 7434.0 | 15.81% | motif file (matrix) |
pdf |
| 65 |  | NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-3 | -7.216e+00 | 0.0030 | 60.0 | 2.35% | 709.5 | 1.51% | motif file (matrix) |
pdf |
| 66 |  | MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer | 1e-3 | -6.981e+00 | 0.0037 | 234.0 | 9.16% | 3515.5 | 7.47% | motif file (matrix) |
pdf |
| 67 |  | Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-2 | -6.769e+00 | 0.0045 | 208.0 | 8.14% | 3096.0 | 6.58% | motif file (matrix) |
pdf |
| 68 |  | EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -6.561e+00 | 0.0055 | 175.0 | 6.85% | 2561.5 | 5.45% | motif file (matrix) |
pdf |
| 69 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer | 1e-2 | -6.316e+00 | 0.0069 | 1429.0 | 55.93% | 24947.6 | 53.04% | motif file (matrix) |
pdf |
| 70 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.315e+00 | 0.0069 | 379.0 | 14.83% | 6045.2 | 12.85% | motif file (matrix) |
pdf |
| 71 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-2 | -6.201e+00 | 0.0075 | 681.0 | 26.65% | 11371.2 | 24.18% | motif file (matrix) |
pdf |
| 72 |  | AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.194e+00 | 0.0075 | 2187.0 | 85.60% | 39274.9 | 83.50% | motif file (matrix) |
pdf |
| 73 |  | ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -5.928e+00 | 0.0096 | 59.0 | 2.31% | 736.3 | 1.57% | motif file (matrix) |
pdf |
| 74 |  | NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -5.886e+00 | 0.0099 | 54.0 | 2.11% | 662.5 | 1.41% | motif file (matrix) |
pdf |
| 75 |  | PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.861e+00 | 0.0100 | 446.0 | 17.46% | 7258.7 | 15.43% | motif file (matrix) |
pdf |
| 76 |  | NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer | 1e-2 | -5.754e+00 | 0.0110 | 160.0 | 6.26% | 2364.3 | 5.03% | motif file (matrix) |
pdf |
| 77 |  | IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer | 1e-2 | -5.667e+00 | 0.0119 | 127.0 | 4.97% | 1826.2 | 3.88% | motif file (matrix) |
pdf |
| 78 |  | Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.512e+00 | 0.0137 | 1157.0 | 45.28% | 20068.0 | 42.67% | motif file (matrix) |
pdf |
| 79 |  | Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.026e+00 | 0.0219 | 524.0 | 20.51% | 8730.6 | 18.56% | motif file (matrix) |
pdf |
| 80 |  | Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.004e+00 | 0.0222 | 914.0 | 35.77% | 15726.2 | 33.44% | motif file (matrix) |
pdf |
| 81 |  | IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer | 1e-2 | -4.796e+00 | 0.0269 | 368.0 | 14.40% | 6010.6 | 12.78% | motif file (matrix) |
pdf |
| 82 |  | OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -4.734e+00 | 0.0283 | 178.0 | 6.97% | 2738.4 | 5.82% | motif file (matrix) |
pdf |
| 83 |  | HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-2 | -4.721e+00 | 0.0283 | 543.0 | 21.25% | 9107.7 | 19.36% | motif file (matrix) |
pdf |
| 84 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.682e+00 | 0.0291 | 544.0 | 21.29% | 9130.4 | 19.41% | motif file (matrix) |
pdf |
| 85 |  | bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -4.626e+00 | 0.0304 | 435.0 | 17.03% | 7207.2 | 15.32% | motif file (matrix) |
pdf |