| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-52 | -1.198e+02 | 0.0000 | 194.0 | 26.72% | 3801.0 | 7.81% | motif file (matrix) |
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| 2 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-47 | -1.093e+02 | 0.0000 | 224.0 | 30.85% | 5294.9 | 10.87% | motif file (matrix) |
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| 3 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-42 | -9.867e+01 | 0.0000 | 294.0 | 40.50% | 8957.2 | 18.39% | motif file (matrix) |
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| 4 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-37 | -8.595e+01 | 0.0000 | 313.0 | 43.11% | 10570.0 | 21.71% | motif file (matrix) |
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| 5 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-34 | -7.926e+01 | 0.0000 | 311.0 | 42.84% | 10826.2 | 22.23% | motif file (matrix) |
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| 6 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-32 | -7.444e+01 | 0.0000 | 326.0 | 44.90% | 11934.8 | 24.51% | motif file (matrix) |
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| 7 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-19 | -4.495e+01 | 0.0000 | 74.0 | 10.19% | 1409.8 | 2.90% | motif file (matrix) |
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| 8 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-19 | -4.396e+01 | 0.0000 | 120.0 | 16.53% | 3251.7 | 6.68% | motif file (matrix) |
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| 9 |  | NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-17 | -3.928e+01 | 0.0000 | 496.0 | 68.32% | 25664.5 | 52.70% | motif file (matrix) |
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| 10 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-17 | -3.927e+01 | 0.0000 | 66.0 | 9.09% | 1279.5 | 2.63% | motif file (matrix) |
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| 11 |  | X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-12 | -2.947e+01 | 0.0000 | 73.0 | 10.06% | 1860.4 | 3.82% | motif file (matrix) |
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| 12 |  | Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-12 | -2.868e+01 | 0.0000 | 183.0 | 25.21% | 7263.8 | 14.92% | motif file (matrix) |
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| 13 |  | Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer | 1e-11 | -2.556e+01 | 0.0000 | 167.0 | 23.00% | 6657.5 | 13.67% | motif file (matrix) |
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| 14 |  | Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-10 | -2.517e+01 | 0.0000 | 105.0 | 14.46% | 3508.8 | 7.21% | motif file (matrix) |
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| 15 |  | NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-9 | -2.298e+01 | 0.0000 | 43.0 | 5.92% | 917.0 | 1.88% | motif file (matrix) |
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| 16 |  | Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-8 | -2.046e+01 | 0.0000 | 41.0 | 5.65% | 923.0 | 1.90% | motif file (matrix) |
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| 17 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-8 | -2.006e+01 | 0.0000 | 70.0 | 9.64% | 2159.0 | 4.43% | motif file (matrix) |
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| 18 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-8 | -2.005e+01 | 0.0000 | 222.0 | 30.58% | 10314.8 | 21.18% | motif file (matrix) |
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| 19 |  | Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-6 | -1.561e+01 | 0.0000 | 344.0 | 47.38% | 18508.4 | 38.01% | motif file (matrix) |
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| 20 |  | NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-6 | -1.466e+01 | 0.0000 | 139.0 | 19.15% | 6154.3 | 12.64% | motif file (matrix) |
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| 21 |  | Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-5 | -1.340e+01 | 0.0000 | 31.0 | 4.27% | 783.4 | 1.61% | motif file (matrix) |
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| 22 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.231e+01 | 0.0001 | 215.0 | 29.61% | 10934.9 | 22.46% | motif file (matrix) |
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| 23 |  | MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-5 | -1.213e+01 | 0.0001 | 245.0 | 33.75% | 12809.6 | 26.30% | motif file (matrix) |
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| 24 |  | Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.168e+01 | 0.0001 | 287.0 | 39.53% | 15530.3 | 31.89% | motif file (matrix) |
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| 25 |  | Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-5 | -1.167e+01 | 0.0001 | 158.0 | 21.76% | 7616.4 | 15.64% | motif file (matrix) |
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| 26 |  | Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-4 | -1.143e+01 | 0.0001 | 420.0 | 57.85% | 24308.0 | 49.92% | motif file (matrix) |
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| 27 |  | NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer | 1e-4 | -9.691e+00 | 0.0006 | 71.0 | 9.78% | 2948.5 | 6.05% | motif file (matrix) |
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| 28 |  | Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer | 1e-4 | -9.654e+00 | 0.0006 | 116.0 | 15.98% | 5453.8 | 11.20% | motif file (matrix) |
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| 29 |  | NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-3 | -8.540e+00 | 0.0018 | 274.0 | 37.74% | 15325.3 | 31.47% | motif file (matrix) |
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| 30 |  | Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -8.026e+00 | 0.0029 | 149.0 | 20.52% | 7643.3 | 15.70% | motif file (matrix) |
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| 31 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-3 | -7.678e+00 | 0.0039 | 94.0 | 12.95% | 4459.3 | 9.16% | motif file (matrix) |
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| 32 |  | Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-3 | -7.411e+00 | 0.0050 | 215.0 | 29.61% | 11828.1 | 24.29% | motif file (matrix) |
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| 33 |  | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-3 | -6.936e+00 | 0.0078 | 178.0 | 24.52% | 9621.2 | 19.76% | motif file (matrix) |
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| 34 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-3 | -6.912e+00 | 0.0078 | 246.0 | 33.88% | 13905.4 | 28.56% | motif file (matrix) |
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| 35 |  | MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-2 | -6.531e+00 | 0.0110 | 294.0 | 40.50% | 17095.0 | 35.11% | motif file (matrix) |
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| 36 |  | HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer | 1e-2 | -6.187e+00 | 0.0151 | 91.0 | 12.53% | 4505.6 | 9.25% | motif file (matrix) |
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| 37 |  | HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.179e+00 | 0.0151 | 63.0 | 8.68% | 2899.8 | 5.95% | motif file (matrix) |
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| 38 |  | Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-2 | -6.059e+00 | 0.0162 | 252.0 | 34.71% | 14502.0 | 29.78% | motif file (matrix) |
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| 39 |  | Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-2 | -6.033e+00 | 0.0162 | 392.0 | 53.99% | 23712.7 | 48.69% | motif file (matrix) |
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| 40 |  | Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-2 | -5.979e+00 | 0.0167 | 79.0 | 10.88% | 3839.5 | 7.88% | motif file (matrix) |
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| 41 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-2 | -5.923e+00 | 0.0172 | 289.0 | 39.81% | 16933.1 | 34.77% | motif file (matrix) |
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| 42 |  | Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-2 | -5.750e+00 | 0.0200 | 493.0 | 67.91% | 30674.5 | 62.99% | motif file (matrix) |
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| 43 |  | GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.691e+00 | 0.0207 | 94.0 | 12.95% | 4763.5 | 9.78% | motif file (matrix) |
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| 44 |  | TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-2 | -5.439e+00 | 0.0261 | 160.0 | 22.04% | 8832.0 | 18.14% | motif file (matrix) |
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| 45 |  | CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer | 1e-2 | -5.355e+00 | 0.0277 | 98.0 | 13.50% | 5060.3 | 10.39% | motif file (matrix) |
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| 46 |  | PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer | 1e-2 | -5.318e+00 | 0.0281 | 539.0 | 74.24% | 34004.5 | 69.83% | motif file (matrix) |
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| 47 |  | RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer | 1e-2 | -5.306e+00 | 0.0281 | 232.0 | 31.96% | 13419.6 | 27.56% | motif file (matrix) |
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| 48 |  | GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.300e+00 | 0.0281 | 60.0 | 8.26% | 2846.9 | 5.85% | motif file (matrix) |
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| 49 |  | Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-2 | -4.773e+00 | 0.0456 | 484.0 | 66.67% | 30353.4 | 62.33% | motif file (matrix) |
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| 50 |  | Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-2 | -4.650e+00 | 0.0505 | 413.0 | 56.89% | 25557.8 | 52.48% | motif file (matrix) |
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