Index of /Public_SPACE/eric/Public_html/
../
5hmC/ 08-May-2026 19:25 -
Backup/ 27-Jul-2026 20:45 -
ChIPseq/ 08-May-2026 19:19 -
DMR/ 03-Oct-2025 04:54 -
GTF/ 08-May-2026 19:56 -
H1_ref/ 13-Jul-2026 17:32 -
PCA/ 17-Jul-2025 02:27 -
RNAseq/ 07-May-2026 20:55 -
091724_Naive_W3MECPC2_aln.coverage.bw 14-Jul-2025 17:14 1646944006
091724_Naive_W3MECPC2_aln.methylC.gz 10-Jul-2025 17:56 256516869
091724_Naive_W3MECPC2_aln.methylC.gz.tbi 10-Jul-2025 17:56 1648171
091724_Naive_W3MECPC2_aln.sorted.bw 10-Jul-2025 16:35 139157848
AN-Naive_onC.bedGraph.gz 18-Jul-2025 17:55 227233509
AN-Naive_onC.methylC.gz 18-Jul-2025 19:20 229420541
AN-Naive_onC.methylC.gz.tbi 18-Jul-2025 19:20 1569045
AN-TSC_onC.bedGraph.gz 18-Jul-2025 17:55 223943268
AN-TSC_onC.methylC.gz 18-Jul-2025 19:20 224412877
AN-TSC_onC.methylC.gz.tbi 18-Jul-2025 19:20 1569997
DSS_Naive_vs_Primed.bw 30-Jul-2025 16:47 6187147
DSS_TSC_vs_Naive.bw 30-Jul-2025 16:47 2477148
DSS_TSC_vs_Primed.bw 30-Jul-2025 16:47 7307099
Fig2A_genome_fraction_MAPQ.pdf 16-Jul-2026 15:22 25070
Final_Genome_Browser_Tracks.json 23-Jul-2026 15:11 17673
H3K9me3_Naive_methylQA.bigWig 02-Apr-2026 00:11 538124908
H9-Naive_noY_onC.methylC.gz 25-Jun-2026 19:38 235774128
H9-Naive_noY_onC.methylC.gz.tbi 25-Jun-2026 19:38 1644547
H9-TSC_noY_onC.methylC.gz 25-Jun-2026 19:38 224716258
H9-TSC_noY_onC.methylC.gz.tbi 25-Jun-2026 19:38 1638488
H9-prime_noY_onC.methylC.gz 25-Jun-2026 19:38 219659628
H9-prime_noY_onC.methylC.gz.tbi 25-Jun-2026 19:38 1638284
H9-primed_normTo10M.bw 05-Aug-2025 20:41 1832414525
LR_normTo10M.bedGraph.gz 05-Aug-2025 15:57 7219618145
LR_normTo10M.bedGraph.gz.tbi 05-Aug-2025 16:06 1366261
LR_normTo10M.bw 05-Aug-2025 17:00 10818049023
Metilene_naive_vs_primed.bw 30-Jul-2025 16:48 17288436
Metilene_naive_vs_tsc.bw 30-Jul-2025 16:48 17522425
Metilene_tsc_vs_primed.bw 30-Jul-2025 16:48 18875184
ONT_MAPQ_tracks.json 16-Jul-2026 02:23 1812
ONT_Naive.MAPQ10.primary.noY.onC.methylC.gz 16-Jul-2026 02:22 248834700
ONT_Naive.MAPQ10.primary.noY.onC.methylC.gz.tbi 16-Jul-2026 02:22 1667747
ONT_Primed.MAPQ10.primary.noY.onC.methylC.gz 16-Jul-2026 02:22 230212348
ONT_Primed.MAPQ10.primary.noY.onC.methylC.gz.tbi 16-Jul-2026 02:23 1662308
ONT_TSC.MAPQ10.primary.noY.onC.methylC.gz 16-Jul-2026 02:23 240118466
ONT_TSC.MAPQ10.primary.noY.onC.methylC.gz.tbi 16-Jul-2026 02:23 1660578
ONT_chr10_PCA_3D.html 10-Jul-2025 21:16 3868609
Primed_W3MECP2_aln.5hmC.cov10.bg 19-Feb-2026 02:44 925532696
Primed_W3MECP2_aln.5hmC.cov10.bw 19-Feb-2026 02:46 251844042
Primed_W3MECP2_aln.methylC.gz 16-Jul-2025 16:59 231608301
Primed_W3MECP2_aln.methylC.gz.tbi 16-Jul-2025 16:59 1645439
Primed_W3MECP2_aln.sorted.bw 16-Jul-2025 17:00 2361474193
Primed_W3MECP2_chr8.bw 07-Aug-2025 17:34 134384924
SR_normTo10M.bedGraph.gz 05-Aug-2025 16:08 11784575306
SR_normTo10M.bw 05-Aug-2025 18:51 9099772186
TE_regions.bed12 08-Apr-2026 19:49 1221940
TE_regions.sorted.bed.gz 08-Apr-2026 20:05 140272
TE_regions.sorted.bed.gz.tbi 08-Apr-2026 20:05 73987
TE_regions.sorted.bed12.gz 08-Apr-2026 20:58 431214
TE_regions.sorted.bed12.gz.tbi 08-Apr-2026 20:58 64898
TSC_GFP_W3MECP2_merged_aln.bed.gz.tbi 16-Jul-2025 16:57 1764713
TSC_GFP_W3MECP2_merged_aln.methylC.gz 16-Jul-2025 16:57 246670279
TSC_GFP_W3MECP2_merged_aln.methylC.gz.tbi 16-Jul-2025 16:57 1645764
TSC_GFP_W3MECP2_merged_aln.sorted.bw 16-Jul-2025 16:58 2037526808
TSC_h1_cov.bw 11-Feb-2026 19:26 232544450
TSC_h1_meth.bw 11-Feb-2026 19:26 265533760
TSC_h2_cov.bw 11-Feb-2026 19:26 231821002
TSC_h2_meth.bw 11-Feb-2026 19:26 264684689
bam_to_bw.sh 10-Jul-2025 20:03 806
combined_tracks.json 06-Aug-2025 18:52 9210
combined_tracks_1.json 08-May-2026 20:11 17393
dmr_DeltaMeth_bigwig_tracks.json 30-Jul-2025 16:14 572
dmr_DeltaMeth_tracks.json 30-Jul-2025 16:14 853
dmr_TSC_GFP_vs_naive_delta.bw 30-Jul-2025 16:15 2549744
dmr_TSC_GFP_vs_naive_min5CpG.filtered_delta.bw 30-Jul-2025 16:15 2111127
dmr_TSC_GFP_vs_prime_delta.bw 30-Jul-2025 16:15 9580125
dmr_TSC_GFP_vs_prime_min5CpG.filtered_delta.bw 30-Jul-2025 16:15 7842427
dmr_naive_vs_prime_delta.bw 30-Jul-2025 16:15 9899030
dmr_naive_vs_prime_min5CpG.filtered_delta.bw 30-Jul-2025 16:15 8401989
map_lt25_uncovered50.bed 15-Jul-2025 20:02 4562701
metadata.tsv 07-Jul-2025 21:25 381
methylC.json 03-Jul-2025 18:59 836
methylation_density_combined.png 07-Jul-2025 20:00 161558
naive_h1_cov.bw 11-Feb-2026 19:25 233905825
naive_h1_meth.bw 11-Feb-2026 19:25 275221849
naive_h2_cov.bw 11-Feb-2026 19:25 233142744
naive_h2_meth.bw 11-Feb-2026 19:25 274331134
prime_h1_cov.bw 11-Feb-2026 19:25 231602451
prime_h1_meth.bw 11-Feb-2026 19:25 253597086
prime_h2_cov.bw 11-Feb-2026 19:25 230911032
prime_h2_meth.bw 11-Feb-2026 19:26 252670247
rescued_region.bw 07-Aug-2025 17:09 1991
step2.4_trimed_ATTACTCG-TATAGCCT_S2_L004_R1_001..> 04-Jul-2025 02:41 8598976
step2.4_trimed_ATTACTCG-TATAGCCT_S2_L004_R1_001..> 10-Jul-2025 20:12 264805272
step2.4_trimed_ATTCAGAA-AGGCGAAG_S3_L004_R1_001..> 03-Jul-2025 22:44 8596728
step2.4_trimed_ATTCAGAA-AGGCGAAG_S3_L004_R1_001..> 10-Jul-2025 20:20 265500307
step2.4_trimed_CTGAAGCT-CAGGACGT_S30_L004_R1_00..> 03-Jul-2025 21:25 8617696
step2.4_trimed_CTGAAGCT-CAGGACGT_S30_L004_R1_00..> 10-Jul-2025 20:30 265714540
step2.4_trimed_GAATTCGT-TAATCTTA_S33_L004_R1_00..> 04-Jul-2025 00:12 8625200
step2.4_trimed_GAATTCGT-TAATCTTA_S33_L004_R1_00..> 10-Jul-2025 20:42 267453192
step2.4_trimed_GAGATTCC-GGCTCTGA_S5_L004_R1_001..> 04-Jul-2025 01:22 8570320
step2.4_trimed_GAGATTCC-GGCTCTGA_S5_L004_R1_001..> 10-Jul-2025 20:50 259417914
test.json 07-Aug-2025 17:35 5163
tracks.json 07-Jul-2025 17:55 3413
tracks_bg.json 03-Jul-2025 19:46 1355
tracks_bg_bam.json 07-Jul-2025 16:25 2935
tracks_metC.json 07-Jul-2025 21:50 1847