| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-39 | -9.090e+01 | 0.0000 | 88.0 | 9.57% | 769.0 | 1.58% | motif file (matrix) |
svg |
| 2 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-26 | -6.202e+01 | 0.0000 | 96.0 | 10.43% | 1354.8 | 2.79% | motif file (matrix) |
svg |
| 3 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-20 | -4.775e+01 | 0.0000 | 109.0 | 11.85% | 2056.7 | 4.24% | motif file (matrix) |
svg |
| 4 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-8 | -1.996e+01 | 0.0000 | 264.0 | 28.70% | 9949.1 | 20.50% | motif file (matrix) |
svg |
| 5 |
| RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer | 1e-8 | -1.901e+01 | 0.0000 | 154.0 | 16.74% | 5093.8 | 10.49% | motif file (matrix) |
svg |
| 6 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-7 | -1.651e+01 | 0.0000 | 89.0 | 9.67% | 2581.6 | 5.32% | motif file (matrix) |
svg |
| 7 |
| RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-6 | -1.513e+01 | 0.0000 | 109.0 | 11.85% | 3484.2 | 7.18% | motif file (matrix) |
svg |
| 8 |
| EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer | 1e-6 | -1.465e+01 | 0.0000 | 138.0 | 15.00% | 4760.4 | 9.81% | motif file (matrix) |
svg |
| 9 |
| RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-5 | -1.281e+01 | 0.0001 | 105.0 | 11.41% | 3494.2 | 7.20% | motif file (matrix) |
svg |
| 10 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-5 | -1.242e+01 | 0.0002 | 41.0 | 4.46% | 984.3 | 2.03% | motif file (matrix) |
svg |
| 11 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-5 | -1.234e+01 | 0.0002 | 72.0 | 7.83% | 2164.1 | 4.46% | motif file (matrix) |
svg |
| 12 |
| RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer | 1e-5 | -1.224e+01 | 0.0002 | 118.0 | 12.83% | 4102.2 | 8.45% | motif file (matrix) |
svg |
| 13 |
| BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer | 1e-5 | -1.217e+01 | 0.0002 | 203.0 | 22.07% | 7967.8 | 16.42% | motif file (matrix) |
svg |
| 14 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.206e+01 | 0.0002 | 79.0 | 8.59% | 2466.8 | 5.08% | motif file (matrix) |
svg |
| 15 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-5 | -1.166e+01 | 0.0002 | 42.0 | 4.57% | 1053.3 | 2.17% | motif file (matrix) |
svg |
| 16 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-4 | -1.068e+01 | 0.0006 | 97.0 | 10.54% | 3331.3 | 6.86% | motif file (matrix) |
svg |
| 17 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-4 | -1.046e+01 | 0.0007 | 149.0 | 16.20% | 5670.1 | 11.68% | motif file (matrix) |
svg |
| 18 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-4 | -1.021e+01 | 0.0009 | 78.0 | 8.48% | 2562.9 | 5.28% | motif file (matrix) |
svg |
| 19 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-4 | -9.928e+00 | 0.0011 | 106.0 | 11.52% | 3793.2 | 7.81% | motif file (matrix) |
svg |
| 20 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-4 | -9.693e+00 | 0.0013 | 120.0 | 13.04% | 4440.3 | 9.15% | motif file (matrix) |
svg |
| 21 |
| Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer | 1e-4 | -9.426e+00 | 0.0016 | 22.0 | 2.39% | 452.1 | 0.93% | motif file (matrix) |
svg |
| 22 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-4 | -9.396e+00 | 0.0016 | 46.0 | 5.00% | 1319.1 | 2.72% | motif file (matrix) |
svg |
| 23 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-4 | -9.344e+00 | 0.0016 | 53.0 | 5.76% | 1598.0 | 3.29% | motif file (matrix) |
svg |
| 24 |
| Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer | 1e-3 | -9.179e+00 | 0.0018 | 34.0 | 3.70% | 877.7 | 1.81% | motif file (matrix) |
svg |
| 25 |
| TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer | 1e-3 | -9.105e+00 | 0.0019 | 106.0 | 11.52% | 3876.7 | 7.99% | motif file (matrix) |
svg |
| 26 |
| CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-3 | -9.064e+00 | 0.0019 | 8.0 | 0.87% | 75.3 | 0.16% | motif file (matrix) |
svg |
| 27 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-3 | -8.997e+00 | 0.0020 | 69.0 | 7.50% | 2280.8 | 4.70% | motif file (matrix) |
svg |
| 28 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-3 | -8.997e+00 | 0.0020 | 96.0 | 10.43% | 3444.7 | 7.10% | motif file (matrix) |
svg |
| 29 |
| Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer | 1e-3 | -8.934e+00 | 0.0020 | 100.0 | 10.87% | 3627.5 | 7.47% | motif file (matrix) |
svg |
| 30 |
| TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer | 1e-3 | -8.902e+00 | 0.0020 | 208.0 | 22.61% | 8652.6 | 17.83% | motif file (matrix) |
svg |
| 31 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-3 | -8.875e+00 | 0.0020 | 155.0 | 16.85% | 6142.7 | 12.66% | motif file (matrix) |
svg |
| 32 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -8.587e+00 | 0.0025 | 46.0 | 5.00% | 1368.9 | 2.82% | motif file (matrix) |
svg |
| 33 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-3 | -8.359e+00 | 0.0030 | 64.0 | 6.96% | 2121.1 | 4.37% | motif file (matrix) |
svg |
| 34 |
| Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer | 1e-3 | -8.199e+00 | 0.0035 | 236.0 | 25.65% | 10125.5 | 20.86% | motif file (matrix) |
svg |
| 35 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-3 | -8.176e+00 | 0.0035 | 79.0 | 8.59% | 2779.1 | 5.73% | motif file (matrix) |
svg |
| 36 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-3 | -8.172e+00 | 0.0035 | 156.0 | 16.96% | 6284.1 | 12.95% | motif file (matrix) |
svg |
| 37 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-3 | -8.169e+00 | 0.0035 | 12.0 | 1.30% | 186.0 | 0.38% | motif file (matrix) |
svg |
| 38 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.871e+00 | 0.0043 | 150.0 | 16.30% | 6044.8 | 12.45% | motif file (matrix) |
svg |
| 39 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-3 | -7.760e+00 | 0.0047 | 201.0 | 21.85% | 8496.0 | 17.50% | motif file (matrix) |
svg |
| 40 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-3 | -7.721e+00 | 0.0047 | 62.0 | 6.74% | 2089.2 | 4.30% | motif file (matrix) |
svg |
| 41 |
| Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer | 1e-3 | -7.714e+00 | 0.0047 | 353.0 | 38.37% | 16068.7 | 33.11% | motif file (matrix) |
svg |
| 42 |
| Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer | 1e-3 | -7.706e+00 | 0.0047 | 87.0 | 9.46% | 3177.1 | 6.55% | motif file (matrix) |
svg |
| 43 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.572e+00 | 0.0051 | 73.0 | 7.93% | 2575.1 | 5.31% | motif file (matrix) |
svg |
| 44 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-3 | -7.526e+00 | 0.0052 | 120.0 | 13.04% | 4693.5 | 9.67% | motif file (matrix) |
svg |
| 45 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-3 | -7.525e+00 | 0.0052 | 64.0 | 6.96% | 2191.7 | 4.52% | motif file (matrix) |
svg |
| 46 |
| NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer | 1e-3 | -7.460e+00 | 0.0054 | 52.0 | 5.65% | 1690.9 | 3.48% | motif file (matrix) |
svg |
| 47 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.346e+00 | 0.0059 | 29.0 | 3.15% | 782.1 | 1.61% | motif file (matrix) |
svg |
| 48 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -7.302e+00 | 0.0060 | 38.0 | 4.13% | 1132.7 | 2.33% | motif file (matrix) |
svg |
| 49 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-3 | -7.249e+00 | 0.0062 | 32.0 | 3.48% | 901.6 | 1.86% | motif file (matrix) |
svg |
| 50 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-3 | -7.216e+00 | 0.0063 | 77.0 | 8.37% | 2785.2 | 5.74% | motif file (matrix) |
svg |
| 51 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-3 | -7.146e+00 | 0.0066 | 109.0 | 11.85% | 4235.9 | 8.73% | motif file (matrix) |
svg |
| 52 |
| NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer | 1e-3 | -7.093e+00 | 0.0068 | 22.0 | 2.39% | 538.8 | 1.11% | motif file (matrix) |
svg |
| 53 |
| OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer | 1e-3 | -7.091e+00 | 0.0068 | 51.0 | 5.54% | 1678.0 | 3.46% | motif file (matrix) |
svg |
| 54 |
| GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer | 1e-3 | -6.945e+00 | 0.0076 | 203.0 | 22.07% | 8731.9 | 17.99% | motif file (matrix) |
svg |
| 55 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-2 | -6.890e+00 | 0.0079 | 196.0 | 21.30% | 8400.7 | 17.31% | motif file (matrix) |
svg |
| 56 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.816e+00 | 0.0084 | 109.0 | 11.85% | 4277.3 | 8.81% | motif file (matrix) |
svg |
| 57 |
| Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer | 1e-2 | -6.782e+00 | 0.0085 | 39.0 | 4.24% | 1206.7 | 2.49% | motif file (matrix) |
svg |
| 58 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-2 | -6.742e+00 | 0.0087 | 19.0 | 2.07% | 447.3 | 0.92% | motif file (matrix) |
svg |
| 59 |
| Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer | 1e-2 | -6.670e+00 | 0.0092 | 51.0 | 5.54% | 1711.3 | 3.53% | motif file (matrix) |
svg |
| 60 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -6.614e+00 | 0.0096 | 52.0 | 5.65% | 1758.7 | 3.62% | motif file (matrix) |
svg |
| 61 |
| STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-2 | -6.572e+00 | 0.0098 | 96.0 | 10.43% | 3711.1 | 7.65% | motif file (matrix) |
svg |
| 62 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.504e+00 | 0.0103 | 20.0 | 2.17% | 492.9 | 1.02% | motif file (matrix) |
svg |
| 63 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-2 | -6.384e+00 | 0.0115 | 64.0 | 6.96% | 2297.4 | 4.73% | motif file (matrix) |
svg |
| 64 |
| Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer | 1e-2 | -6.337e+00 | 0.0118 | 128.0 | 13.91% | 5230.5 | 10.78% | motif file (matrix) |
svg |
| 65 |
| EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.085e+00 | 0.0150 | 78.0 | 8.48% | 2952.2 | 6.08% | motif file (matrix) |
svg |
| 66 |
| Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.957e+00 | 0.0168 | 166.0 | 18.04% | 7109.9 | 14.65% | motif file (matrix) |
svg |
| 67 |
| TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer | 1e-2 | -5.846e+00 | 0.0185 | 112.0 | 12.17% | 4550.7 | 9.38% | motif file (matrix) |
svg |
| 68 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.786e+00 | 0.0193 | 72.0 | 7.83% | 2716.2 | 5.60% | motif file (matrix) |
svg |
| 69 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -5.725e+00 | 0.0202 | 120.0 | 13.04% | 4945.5 | 10.19% | motif file (matrix) |
svg |
| 70 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.680e+00 | 0.0209 | 32.0 | 3.48% | 998.8 | 2.06% | motif file (matrix) |
svg |
| 71 |
| FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer | 1e-2 | -5.477e+00 | 0.0252 | 83.0 | 9.02% | 3254.1 | 6.70% | motif file (matrix) |
svg |
| 72 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -5.405e+00 | 0.0267 | 166.0 | 18.04% | 7210.7 | 14.86% | motif file (matrix) |
svg |
| 73 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-2 | -5.266e+00 | 0.0303 | 24.0 | 2.61% | 705.2 | 1.45% | motif file (matrix) |
svg |
| 74 |
| Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer | 1e-2 | -5.174e+00 | 0.0328 | 231.0 | 25.11% | 10468.6 | 21.57% | motif file (matrix) |
svg |
| 75 |
| LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer | 1e-2 | -5.146e+00 | 0.0332 | 114.0 | 12.39% | 4752.8 | 9.79% | motif file (matrix) |
svg |
| 76 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-2 | -5.128e+00 | 0.0334 | 50.0 | 5.43% | 1808.4 | 3.73% | motif file (matrix) |
svg |
| 77 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-2 | -4.998e+00 | 0.0375 | 67.0 | 7.28% | 2583.1 | 5.32% | motif file (matrix) |
svg |
| 78 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-2 | -4.992e+00 | 0.0375 | 89.0 | 9.67% | 3598.1 | 7.41% | motif file (matrix) |
svg |
| 79 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-2 | -4.766e+00 | 0.0461 | 223.0 | 24.24% | 10162.0 | 20.94% | motif file (matrix) |
svg |
| 80 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-2 | -4.731e+00 | 0.0472 | 16.0 | 1.74% | 427.6 | 0.88% | motif file (matrix) |
svg |