| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-47 | -1.095e+02 | 0.0000 | 103.0 | 8.65% | 659.9 | 1.37% | motif file (matrix) |
svg |
| 2 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-29 | -6.733e+01 | 0.0000 | 145.0 | 12.17% | 2004.5 | 4.16% | motif file (matrix) |
svg |
| 3 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-28 | -6.630e+01 | 0.0000 | 105.0 | 8.82% | 1147.1 | 2.38% | motif file (matrix) |
svg |
| 4 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-21 | -4.995e+01 | 0.0000 | 121.0 | 10.16% | 1801.9 | 3.74% | motif file (matrix) |
svg |
| 5 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-20 | -4.676e+01 | 0.0000 | 366.0 | 30.73% | 9319.2 | 19.35% | motif file (matrix) |
svg |
| 6 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-20 | -4.663e+01 | 0.0000 | 94.0 | 7.89% | 1238.5 | 2.57% | motif file (matrix) |
svg |
| 7 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-19 | -4.541e+01 | 0.0000 | 126.0 | 10.58% | 2034.6 | 4.22% | motif file (matrix) |
svg |
| 8 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-19 | -4.506e+01 | 0.0000 | 143.0 | 12.01% | 2486.5 | 5.16% | motif file (matrix) |
svg |
| 9 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-19 | -4.458e+01 | 0.0000 | 125.0 | 10.50% | 2030.3 | 4.21% | motif file (matrix) |
svg |
| 10 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-19 | -4.457e+01 | 0.0000 | 158.0 | 13.27% | 2907.7 | 6.04% | motif file (matrix) |
svg |
| 11 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-17 | -4.115e+01 | 0.0000 | 73.0 | 6.13% | 877.6 | 1.82% | motif file (matrix) |
svg |
| 12 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-17 | -4.027e+01 | 0.0000 | 139.0 | 11.67% | 2521.3 | 5.23% | motif file (matrix) |
svg |
| 13 |
| c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-14 | -3.339e+01 | 0.0000 | 76.0 | 6.38% | 1091.8 | 2.27% | motif file (matrix) |
svg |
| 14 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-14 | -3.338e+01 | 0.0000 | 224.0 | 18.81% | 5337.4 | 11.08% | motif file (matrix) |
svg |
| 15 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-14 | -3.294e+01 | 0.0000 | 58.0 | 4.87% | 697.2 | 1.45% | motif file (matrix) |
svg |
| 16 |
| BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer | 1e-14 | -3.243e+01 | 0.0000 | 293.0 | 24.60% | 7668.9 | 15.92% | motif file (matrix) |
svg |
| 17 |
| NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer | 1e-13 | -3.140e+01 | 0.0000 | 176.0 | 14.78% | 3928.6 | 8.16% | motif file (matrix) |
svg |
| 18 |
| Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer | 1e-13 | -2.998e+01 | 0.0000 | 77.0 | 6.47% | 1193.0 | 2.48% | motif file (matrix) |
svg |
| 19 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-12 | -2.920e+01 | 0.0000 | 97.0 | 8.14% | 1728.7 | 3.59% | motif file (matrix) |
svg |
| 20 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-12 | -2.845e+01 | 0.0000 | 138.0 | 11.59% | 2911.2 | 6.04% | motif file (matrix) |
svg |
| 21 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-12 | -2.828e+01 | 0.0000 | 120.0 | 10.08% | 2395.2 | 4.97% | motif file (matrix) |
svg |
| 22 |
| TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer | 1e-12 | -2.817e+01 | 0.0000 | 302.0 | 25.36% | 8254.8 | 17.14% | motif file (matrix) |
svg |
| 23 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-12 | -2.768e+01 | 0.0000 | 233.0 | 19.56% | 5944.8 | 12.34% | motif file (matrix) |
svg |
| 24 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-11 | -2.721e+01 | 0.0000 | 262.0 | 22.00% | 6946.5 | 14.42% | motif file (matrix) |
svg |
| 25 |
| Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer | 1e-10 | -2.513e+01 | 0.0000 | 341.0 | 28.63% | 9854.0 | 20.46% | motif file (matrix) |
svg |
| 26 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-9 | -2.297e+01 | 0.0000 | 116.0 | 9.74% | 2489.9 | 5.17% | motif file (matrix) |
svg |
| 27 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-9 | -2.250e+01 | 0.0000 | 208.0 | 17.46% | 5433.5 | 11.28% | motif file (matrix) |
svg |
| 28 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-9 | -2.155e+01 | 0.0000 | 51.0 | 4.28% | 761.1 | 1.58% | motif file (matrix) |
svg |
| 29 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-9 | -2.079e+01 | 0.0000 | 161.0 | 13.52% | 3995.1 | 8.29% | motif file (matrix) |
svg |
| 30 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-8 | -2.037e+01 | 0.0000 | 156.0 | 13.10% | 3858.1 | 8.01% | motif file (matrix) |
svg |
| 31 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-8 | -1.977e+01 | 0.0000 | 283.0 | 23.76% | 8222.6 | 17.07% | motif file (matrix) |
svg |
| 32 |
| TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer | 1e-8 | -1.964e+01 | 0.0000 | 173.0 | 14.53% | 4455.3 | 9.25% | motif file (matrix) |
svg |
| 33 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-8 | -1.944e+01 | 0.0000 | 109.0 | 9.15% | 2436.4 | 5.06% | motif file (matrix) |
svg |
| 34 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-8 | -1.923e+01 | 0.0000 | 169.0 | 14.19% | 4349.6 | 9.03% | motif file (matrix) |
svg |
| 35 |
| NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer | 1e-7 | -1.839e+01 | 0.0000 | 94.0 | 7.89% | 2034.1 | 4.22% | motif file (matrix) |
svg |
| 36 |
| NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer | 1e-7 | -1.801e+01 | 0.0000 | 42.0 | 3.53% | 627.4 | 1.30% | motif file (matrix) |
svg |
| 37 |
| KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer | 1e-7 | -1.754e+01 | 0.0000 | 206.0 | 17.30% | 5710.1 | 11.85% | motif file (matrix) |
svg |
| 38 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-7 | -1.750e+01 | 0.0000 | 167.0 | 14.02% | 4395.6 | 9.12% | motif file (matrix) |
svg |
| 39 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-7 | -1.682e+01 | 0.0000 | 212.0 | 17.80% | 5973.3 | 12.40% | motif file (matrix) |
svg |
| 40 |
| EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer | 1e-6 | -1.544e+01 | 0.0000 | 170.0 | 14.27% | 4640.9 | 9.63% | motif file (matrix) |
svg |
| 41 |
| JunD(bZIP)/K562-JunD-ChIP-Seq/Homer | 1e-6 | -1.542e+01 | 0.0000 | 26.0 | 2.18% | 316.9 | 0.66% | motif file (matrix) |
svg |
| 42 |
| TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer | 1e-6 | -1.498e+01 | 0.0000 | 187.0 | 15.70% | 5256.6 | 10.91% | motif file (matrix) |
svg |
| 43 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-6 | -1.456e+01 | 0.0000 | 201.0 | 16.88% | 5776.4 | 11.99% | motif file (matrix) |
svg |
| 44 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-5 | -1.283e+01 | 0.0000 | 30.0 | 2.52% | 459.2 | 0.95% | motif file (matrix) |
svg |
| 45 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-5 | -1.267e+01 | 0.0000 | 280.0 | 23.51% | 8792.0 | 18.25% | motif file (matrix) |
svg |
| 46 |
| Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-5 | -1.262e+01 | 0.0000 | 46.0 | 3.86% | 882.8 | 1.83% | motif file (matrix) |
svg |
| 47 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-5 | -1.220e+01 | 0.0000 | 26.0 | 2.18% | 378.3 | 0.79% | motif file (matrix) |
svg |
| 48 |
| Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer | 1e-4 | -1.131e+01 | 0.0001 | 267.0 | 22.42% | 8468.7 | 17.58% | motif file (matrix) |
svg |
| 49 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-4 | -1.120e+01 | 0.0001 | 237.0 | 19.90% | 7383.4 | 15.33% | motif file (matrix) |
svg |
| 50 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-4 | -1.116e+01 | 0.0001 | 101.0 | 8.48% | 2641.5 | 5.48% | motif file (matrix) |
svg |
| 51 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-4 | -1.101e+01 | 0.0001 | 24.0 | 2.02% | 357.1 | 0.74% | motif file (matrix) |
svg |
| 52 |
| Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-4 | -1.080e+01 | 0.0002 | 36.0 | 3.02% | 670.9 | 1.39% | motif file (matrix) |
svg |
| 53 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-4 | -9.865e+00 | 0.0004 | 460.0 | 38.62% | 16004.2 | 33.22% | motif file (matrix) |
svg |
| 54 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-4 | -9.803e+00 | 0.0004 | 312.0 | 26.20% | 10333.8 | 21.45% | motif file (matrix) |
svg |
| 55 |
| EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-4 | -9.662e+00 | 0.0005 | 48.0 | 4.03% | 1056.7 | 2.19% | motif file (matrix) |
svg |
| 56 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-4 | -9.571e+00 | 0.0005 | 103.0 | 8.65% | 2822.0 | 5.86% | motif file (matrix) |
svg |
| 57 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-4 | -9.220e+00 | 0.0007 | 184.0 | 15.45% | 5683.5 | 11.80% | motif file (matrix) |
svg |
| 58 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -8.991e+00 | 0.0009 | 306.0 | 25.69% | 10220.2 | 21.22% | motif file (matrix) |
svg |
| 59 |
| Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer | 1e-3 | -8.943e+00 | 0.0009 | 31.0 | 2.60% | 596.9 | 1.24% | motif file (matrix) |
svg |
| 60 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-3 | -8.821e+00 | 0.0011 | 45.0 | 3.78% | 1005.5 | 2.09% | motif file (matrix) |
svg |
| 61 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-3 | -8.781e+00 | 0.0011 | 117.0 | 9.82% | 3362.2 | 6.98% | motif file (matrix) |
svg |
| 62 |
| CRE(bZIP)/Promoter/Homer | 1e-3 | -8.313e+00 | 0.0017 | 38.0 | 3.19% | 820.6 | 1.70% | motif file (matrix) |
svg |
| 63 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-3 | -8.253e+00 | 0.0018 | 68.0 | 5.71% | 1757.2 | 3.65% | motif file (matrix) |
svg |
| 64 |
| Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -8.177e+00 | 0.0019 | 76.0 | 6.38% | 2024.0 | 4.20% | motif file (matrix) |
svg |
| 65 |
| Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.709e+00 | 0.0030 | 59.0 | 4.95% | 1501.8 | 3.12% | motif file (matrix) |
svg |
| 66 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-3 | -7.174e+00 | 0.0050 | 418.0 | 35.10% | 14823.4 | 30.77% | motif file (matrix) |
svg |
| 67 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-3 | -7.027e+00 | 0.0057 | 311.0 | 26.11% | 10713.2 | 22.24% | motif file (matrix) |
svg |
| 68 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-3 | -7.003e+00 | 0.0057 | 97.0 | 8.14% | 2830.9 | 5.88% | motif file (matrix) |
svg |
| 69 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-3 | -6.935e+00 | 0.0060 | 661.0 | 55.50% | 24555.2 | 50.97% | motif file (matrix) |
svg |
| 70 |
| Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.786e+00 | 0.0069 | 82.0 | 6.88% | 2333.0 | 4.84% | motif file (matrix) |
svg |
| 71 |
| RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer | 1e-2 | -6.382e+00 | 0.0102 | 155.0 | 13.01% | 4966.1 | 10.31% | motif file (matrix) |
svg |
| 72 |
| Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer | 1e-2 | -6.294e+00 | 0.0110 | 434.0 | 36.44% | 15620.5 | 32.43% | motif file (matrix) |
svg |
| 73 |
| Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer | 1e-2 | -6.085e+00 | 0.0134 | 410.0 | 34.42% | 14721.6 | 30.56% | motif file (matrix) |
svg |
| 74 |
| Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer | 1e-2 | -5.955e+00 | 0.0150 | 190.0 | 15.95% | 6315.0 | 13.11% | motif file (matrix) |
svg |
| 75 |
| MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.854e+00 | 0.0164 | 45.0 | 3.78% | 1167.8 | 2.42% | motif file (matrix) |
svg |
| 76 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.410e+00 | 0.0252 | 239.0 | 20.07% | 8247.5 | 17.12% | motif file (matrix) |
svg |
| 77 |
| Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer | 1e-2 | -5.371e+00 | 0.0259 | 207.0 | 17.38% | 7043.6 | 14.62% | motif file (matrix) |
svg |
| 78 |
| IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer | 1e-2 | -5.319e+00 | 0.0269 | 46.0 | 3.86% | 1236.5 | 2.57% | motif file (matrix) |
svg |
| 79 |
| STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-2 | -5.293e+00 | 0.0272 | 76.0 | 6.38% | 2261.1 | 4.69% | motif file (matrix) |
svg |
| 80 |
| p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.023e+00 | 0.0352 | 7.0 | 0.59% | 87.8 | 0.18% | motif file (matrix) |
svg |
| 81 |
| Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer | 1e-2 | -5.001e+00 | 0.0356 | 200.0 | 16.79% | 6841.8 | 14.20% | motif file (matrix) |
svg |
| 82 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-2 | -4.989e+00 | 0.0356 | 171.0 | 14.36% | 5754.2 | 11.95% | motif file (matrix) |
svg |
| 83 |
| Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer | 1e-2 | -4.958e+00 | 0.0363 | 97.0 | 8.14% | 3041.0 | 6.31% | motif file (matrix) |
svg |
| 84 |
| Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -4.900e+00 | 0.0379 | 216.0 | 18.14% | 7464.3 | 15.50% | motif file (matrix) |
svg |
| 85 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -4.771e+00 | 0.0427 | 34.0 | 2.85% | 880.4 | 1.83% | motif file (matrix) |
svg |
| 86 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-2 | -4.731e+00 | 0.0439 | 405.0 | 34.01% | 14820.9 | 30.77% | motif file (matrix) |
svg |
| 87 |
| GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer | 1e-2 | -4.653e+00 | 0.0469 | 214.0 | 17.97% | 7433.9 | 15.43% | motif file (matrix) |
svg |
| 88 |
| STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-2 | -4.630e+00 | 0.0474 | 128.0 | 10.75% | 4212.8 | 8.75% | motif file (matrix) |
svg |