| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-31 | -7.253e+01 | 0.0000 | 70.0 | 7.93% | 632.1 | 1.31% | motif file (matrix) |
svg |
| 2 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-23 | -5.379e+01 | 0.0000 | 298.0 | 33.75% | 9342.1 | 19.33% | motif file (matrix) |
svg |
| 3 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-19 | -4.554e+01 | 0.0000 | 70.0 | 7.93% | 1020.2 | 2.11% | motif file (matrix) |
svg |
| 4 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-18 | -4.242e+01 | 0.0000 | 95.0 | 10.76% | 1837.2 | 3.80% | motif file (matrix) |
svg |
| 5 |
| NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer | 1e-18 | -4.185e+01 | 0.0000 | 163.0 | 18.46% | 4303.6 | 8.91% | motif file (matrix) |
svg |
| 6 |
| TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer | 1e-9 | -2.080e+01 | 0.0000 | 141.0 | 15.97% | 4585.4 | 9.49% | motif file (matrix) |
svg |
| 7 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-8 | -1.951e+01 | 0.0000 | 105.0 | 11.89% | 3153.0 | 6.52% | motif file (matrix) |
svg |
| 8 |
| TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer | 1e-7 | -1.823e+01 | 0.0000 | 155.0 | 17.55% | 5399.4 | 11.17% | motif file (matrix) |
svg |
| 9 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.619e+01 | 0.0000 | 40.0 | 4.53% | 844.9 | 1.75% | motif file (matrix) |
svg |
| 10 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-6 | -1.533e+01 | 0.0000 | 36.0 | 4.08% | 740.3 | 1.53% | motif file (matrix) |
svg |
| 11 |
| BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer | 1e-6 | -1.524e+01 | 0.0000 | 195.0 | 22.08% | 7533.9 | 15.59% | motif file (matrix) |
svg |
| 12 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-6 | -1.467e+01 | 0.0000 | 82.0 | 9.29% | 2508.5 | 5.19% | motif file (matrix) |
svg |
| 13 |
| TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer | 1e-6 | -1.452e+01 | 0.0000 | 211.0 | 23.90% | 8379.1 | 17.34% | motif file (matrix) |
svg |
| 14 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-6 | -1.434e+01 | 0.0000 | 116.0 | 13.14% | 3986.3 | 8.25% | motif file (matrix) |
svg |
| 15 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-6 | -1.425e+01 | 0.0000 | 18.0 | 2.04% | 237.0 | 0.49% | motif file (matrix) |
svg |
| 16 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-6 | -1.382e+01 | 0.0000 | 76.0 | 8.61% | 2316.0 | 4.79% | motif file (matrix) |
svg |
| 17 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-5 | -1.345e+01 | 0.0000 | 139.0 | 15.74% | 5101.3 | 10.56% | motif file (matrix) |
svg |
| 18 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-5 | -1.344e+01 | 0.0000 | 69.0 | 7.81% | 2053.8 | 4.25% | motif file (matrix) |
svg |
| 19 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-5 | -1.213e+01 | 0.0001 | 150.0 | 16.99% | 5745.6 | 11.89% | motif file (matrix) |
svg |
| 20 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-5 | -1.180e+01 | 0.0002 | 45.0 | 5.10% | 1199.0 | 2.48% | motif file (matrix) |
svg |
| 21 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-5 | -1.165e+01 | 0.0002 | 59.0 | 6.68% | 1758.0 | 3.64% | motif file (matrix) |
svg |
| 22 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-4 | -1.115e+01 | 0.0003 | 76.0 | 8.61% | 2499.3 | 5.17% | motif file (matrix) |
svg |
| 23 |
| Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer | 1e-4 | -1.101e+01 | 0.0003 | 228.0 | 25.82% | 9667.5 | 20.01% | motif file (matrix) |
svg |
| 24 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-4 | -1.100e+01 | 0.0003 | 199.0 | 22.54% | 8234.2 | 17.04% | motif file (matrix) |
svg |
| 25 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-4 | -1.087e+01 | 0.0003 | 65.0 | 7.36% | 2054.8 | 4.25% | motif file (matrix) |
svg |
| 26 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-4 | -1.061e+01 | 0.0004 | 75.0 | 8.49% | 2497.0 | 5.17% | motif file (matrix) |
svg |
| 27 |
| HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer | 1e-4 | -1.055e+01 | 0.0004 | 263.0 | 29.78% | 11497.2 | 23.79% | motif file (matrix) |
svg |
| 28 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-4 | -9.754e+00 | 0.0009 | 74.0 | 8.38% | 2523.0 | 5.22% | motif file (matrix) |
svg |
| 29 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-4 | -9.608e+00 | 0.0010 | 35.0 | 3.96% | 927.7 | 1.92% | motif file (matrix) |
svg |
| 30 |
| NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer | 1e-4 | -9.506e+00 | 0.0011 | 62.0 | 7.02% | 2025.9 | 4.19% | motif file (matrix) |
svg |
| 31 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-4 | -9.440e+00 | 0.0011 | 111.0 | 12.57% | 4219.3 | 8.73% | motif file (matrix) |
svg |
| 32 |
| RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-4 | -9.305e+00 | 0.0012 | 94.0 | 10.65% | 3453.3 | 7.15% | motif file (matrix) |
svg |
| 33 |
| RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer | 1e-3 | -8.505e+00 | 0.0026 | 106.0 | 12.00% | 4090.3 | 8.46% | motif file (matrix) |
svg |
| 34 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-3 | -8.257e+00 | 0.0033 | 195.0 | 22.08% | 8439.1 | 17.46% | motif file (matrix) |
svg |
| 35 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-3 | -8.235e+00 | 0.0033 | 234.0 | 26.50% | 10409.0 | 21.54% | motif file (matrix) |
svg |
| 36 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.982e+00 | 0.0041 | 129.0 | 14.61% | 5243.8 | 10.85% | motif file (matrix) |
svg |
| 37 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-3 | -7.571e+00 | 0.0060 | 79.0 | 8.95% | 2945.1 | 6.09% | motif file (matrix) |
svg |
| 38 |
| NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer | 1e-3 | -7.546e+00 | 0.0060 | 25.0 | 2.83% | 649.9 | 1.34% | motif file (matrix) |
svg |
| 39 |
| Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer | 1e-3 | -7.442e+00 | 0.0064 | 334.0 | 37.83% | 15749.8 | 32.59% | motif file (matrix) |
svg |
| 40 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -6.973e+00 | 0.0100 | 16.0 | 1.81% | 350.9 | 0.73% | motif file (matrix) |
svg |
| 41 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-2 | -6.842e+00 | 0.0111 | 17.0 | 1.93% | 389.5 | 0.81% | motif file (matrix) |
svg |
| 42 |
| Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer | 1e-2 | -6.733e+00 | 0.0121 | 136.0 | 15.40% | 5761.0 | 11.92% | motif file (matrix) |
svg |
| 43 |
| RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -6.309e+00 | 0.0181 | 85.0 | 9.63% | 3365.2 | 6.96% | motif file (matrix) |
svg |
| 44 |
| Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer | 1e-2 | -6.251e+00 | 0.0188 | 171.0 | 19.37% | 7578.1 | 15.68% | motif file (matrix) |
svg |
| 45 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-2 | -6.172e+00 | 0.0199 | 154.0 | 17.44% | 6741.1 | 13.95% | motif file (matrix) |
svg |
| 46 |
| STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-2 | -5.986e+00 | 0.0234 | 109.0 | 12.34% | 4556.3 | 9.43% | motif file (matrix) |
svg |
| 47 |
| Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer | 1e-2 | -5.825e+00 | 0.0269 | 82.0 | 9.29% | 3284.3 | 6.80% | motif file (matrix) |
svg |
| 48 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-2 | -5.763e+00 | 0.0280 | 139.0 | 15.74% | 6065.1 | 12.55% | motif file (matrix) |
svg |
| 49 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -5.738e+00 | 0.0281 | 59.0 | 6.68% | 2223.6 | 4.60% | motif file (matrix) |
svg |
| 50 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.583e+00 | 0.0322 | 73.0 | 8.27% | 2890.1 | 5.98% | motif file (matrix) |
svg |
| 51 |
| LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer | 1e-2 | -5.492e+00 | 0.0346 | 141.0 | 15.97% | 6212.0 | 12.86% | motif file (matrix) |
svg |
| 52 |
| Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.468e+00 | 0.0347 | 187.0 | 21.18% | 8539.2 | 17.67% | motif file (matrix) |
svg |
| 53 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.393e+00 | 0.0367 | 18.0 | 2.04% | 487.8 | 1.01% | motif file (matrix) |
svg |
| 54 |
| EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer | 1e-2 | -5.302e+00 | 0.0395 | 105.0 | 11.89% | 4465.3 | 9.24% | motif file (matrix) |
svg |
| 55 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-2 | -5.143e+00 | 0.0455 | 99.0 | 11.21% | 4197.3 | 8.69% | motif file (matrix) |
svg |
| 56 |
| Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-2 | -5.041e+00 | 0.0494 | 14.0 | 1.59% | 353.8 | 0.73% | motif file (matrix) |
svg |
| 57 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -4.959e+00 | 0.0527 | 98.0 | 11.10% | 4177.7 | 8.65% | motif file (matrix) |
svg |
| 58 |
| HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer | 1e-2 | -4.943e+00 | 0.0527 | 30.0 | 3.40% | 1005.8 | 2.08% | motif file (matrix) |
svg |
| 59 |
| Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-2 | -4.935e+00 | 0.0527 | 64.0 | 7.25% | 2547.8 | 5.27% | motif file (matrix) |
svg |
| 60 |
| PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer | 1e-2 | -4.934e+00 | 0.0527 | 26.0 | 2.94% | 836.2 | 1.73% | motif file (matrix) |
svg |
| 61 |
| Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer | 1e-2 | -4.921e+00 | 0.0527 | 66.0 | 7.47% | 2643.3 | 5.47% | motif file (matrix) |
svg |
| 62 |
| c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.905e+00 | 0.0527 | 31.0 | 3.51% | 1051.1 | 2.18% | motif file (matrix) |
svg |
| 63 |
| ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.834e+00 | 0.0540 | 102.0 | 11.55% | 4393.1 | 9.09% | motif file (matrix) |
svg |
| 64 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -4.819e+00 | 0.0540 | 329.0 | 37.26% | 16119.5 | 33.36% | motif file (matrix) |
svg |
| 65 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -4.816e+00 | 0.0540 | 11.0 | 1.25% | 254.6 | 0.53% | motif file (matrix) |
svg |
| 66 |
| HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.770e+00 | 0.0550 | 23.0 | 2.60% | 722.2 | 1.49% | motif file (matrix) |
svg |
| 67 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-2 | -4.768e+00 | 0.0550 | 218.0 | 24.69% | 10290.1 | 21.29% | motif file (matrix) |
svg |
| 68 |
| ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.712e+00 | 0.0566 | 39.0 | 4.42% | 1420.8 | 2.94% | motif file (matrix) |
svg |
| 69 |
| Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -4.710e+00 | 0.0566 | 34.0 | 3.85% | 1198.9 | 2.48% | motif file (matrix) |
svg |
| 70 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -4.685e+00 | 0.0566 | 28.0 | 3.17% | 939.4 | 1.94% | motif file (matrix) |
svg |
| 71 |
| IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer | 1e-2 | -4.651e+00 | 0.0576 | 38.0 | 4.30% | 1381.4 | 2.86% | motif file (matrix) |
svg |
| 72 |
| MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer | 1e-2 | -4.621e+00 | 0.0585 | 177.0 | 20.05% | 8210.0 | 16.99% | motif file (matrix) |
svg |