| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-39 | -9.175e+01 | 0.0000 | 88.0 | 9.57% | 759.7 | 1.57% | motif file (matrix) |
svg |
| 2 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-27 | -6.302e+01 | 0.0000 | 96.0 | 10.43% | 1335.2 | 2.75% | motif file (matrix) |
svg |
| 3 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-20 | -4.673e+01 | 0.0000 | 109.0 | 11.85% | 2084.1 | 4.30% | motif file (matrix) |
svg |
| 4 |
| RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer | 1e-8 | -1.941e+01 | 0.0000 | 154.0 | 16.74% | 5060.8 | 10.43% | motif file (matrix) |
svg |
| 5 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-8 | -1.871e+01 | 0.0000 | 264.0 | 28.70% | 10076.5 | 20.77% | motif file (matrix) |
svg |
| 6 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-7 | -1.694e+01 | 0.0000 | 89.0 | 9.67% | 2555.8 | 5.27% | motif file (matrix) |
svg |
| 7 |
| RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-6 | -1.553e+01 | 0.0000 | 109.0 | 11.85% | 3454.9 | 7.12% | motif file (matrix) |
svg |
| 8 |
| EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer | 1e-6 | -1.467e+01 | 0.0000 | 138.0 | 15.00% | 4756.9 | 9.80% | motif file (matrix) |
svg |
| 9 |
| RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-6 | -1.434e+01 | 0.0000 | 105.0 | 11.41% | 3375.0 | 6.96% | motif file (matrix) |
svg |
| 10 |
| RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer | 1e-5 | -1.349e+01 | 0.0001 | 118.0 | 12.83% | 3992.6 | 8.23% | motif file (matrix) |
svg |
| 11 |
| BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer | 1e-5 | -1.314e+01 | 0.0001 | 203.0 | 22.07% | 7848.6 | 16.18% | motif file (matrix) |
svg |
| 12 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-5 | -1.294e+01 | 0.0001 | 72.0 | 7.83% | 2125.3 | 4.38% | motif file (matrix) |
svg |
| 13 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-5 | -1.261e+01 | 0.0001 | 41.0 | 4.46% | 976.1 | 2.01% | motif file (matrix) |
svg |
| 14 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.183e+01 | 0.0002 | 79.0 | 8.59% | 2481.3 | 5.11% | motif file (matrix) |
svg |
| 15 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-4 | -1.129e+01 | 0.0004 | 106.0 | 11.52% | 3664.0 | 7.55% | motif file (matrix) |
svg |
| 16 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-4 | -1.102e+01 | 0.0004 | 42.0 | 4.57% | 1082.7 | 2.23% | motif file (matrix) |
svg |
| 17 |
| Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer | 1e-4 | -1.034e+01 | 0.0008 | 22.0 | 2.39% | 424.2 | 0.87% | motif file (matrix) |
svg |
| 18 |
| TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer | 1e-4 | -1.018e+01 | 0.0009 | 208.0 | 22.61% | 8461.8 | 17.44% | motif file (matrix) |
svg |
| 19 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-4 | -1.010e+01 | 0.0009 | 96.0 | 10.43% | 3338.4 | 6.88% | motif file (matrix) |
svg |
| 20 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-4 | -9.950e+00 | 0.0010 | 149.0 | 16.20% | 5727.8 | 11.81% | motif file (matrix) |
svg |
| 21 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-4 | -9.890e+00 | 0.0010 | 78.0 | 8.48% | 2586.5 | 5.33% | motif file (matrix) |
svg |
| 22 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-4 | -9.710e+00 | 0.0012 | 53.0 | 5.76% | 1574.1 | 3.24% | motif file (matrix) |
svg |
| 23 |
| Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer | 1e-4 | -9.646e+00 | 0.0012 | 34.0 | 3.70% | 855.7 | 1.76% | motif file (matrix) |
svg |
| 24 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-4 | -9.628e+00 | 0.0012 | 201.0 | 21.85% | 8206.2 | 16.91% | motif file (matrix) |
svg |
| 25 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-4 | -9.541e+00 | 0.0012 | 46.0 | 5.00% | 1310.9 | 2.70% | motif file (matrix) |
svg |
| 26 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-4 | -9.444e+00 | 0.0013 | 120.0 | 13.04% | 4465.4 | 9.20% | motif file (matrix) |
svg |
| 27 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-4 | -9.318e+00 | 0.0014 | 97.0 | 10.54% | 3455.9 | 7.12% | motif file (matrix) |
svg |
| 28 |
| Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer | 1e-4 | -9.297e+00 | 0.0014 | 100.0 | 10.87% | 3589.2 | 7.40% | motif file (matrix) |
svg |
| 29 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-4 | -9.252e+00 | 0.0014 | 156.0 | 16.96% | 6137.5 | 12.65% | motif file (matrix) |
svg |
| 30 |
| Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer | 1e-3 | -9.148e+00 | 0.0015 | 236.0 | 25.65% | 9964.8 | 20.54% | motif file (matrix) |
svg |
| 31 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-3 | -9.088e+00 | 0.0016 | 12.0 | 1.30% | 167.3 | 0.34% | motif file (matrix) |
svg |
| 32 |
| TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer | 1e-3 | -8.974e+00 | 0.0017 | 106.0 | 11.52% | 3888.4 | 8.01% | motif file (matrix) |
svg |
| 33 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-3 | -8.932e+00 | 0.0017 | 120.0 | 13.04% | 4522.2 | 9.32% | motif file (matrix) |
svg |
| 34 |
| CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-3 | -8.462e+00 | 0.0027 | 8.0 | 0.87% | 82.7 | 0.17% | motif file (matrix) |
svg |
| 35 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-3 | -8.348e+00 | 0.0029 | 64.0 | 6.96% | 2121.9 | 4.37% | motif file (matrix) |
svg |
| 36 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-3 | -8.248e+00 | 0.0031 | 62.0 | 6.74% | 2045.1 | 4.22% | motif file (matrix) |
svg |
| 37 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -8.218e+00 | 0.0031 | 46.0 | 5.00% | 1391.6 | 2.87% | motif file (matrix) |
svg |
| 38 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-3 | -8.074e+00 | 0.0035 | 155.0 | 16.85% | 6248.4 | 12.88% | motif file (matrix) |
svg |
| 39 |
| Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer | 1e-3 | -7.931e+00 | 0.0039 | 51.0 | 5.54% | 1614.0 | 3.33% | motif file (matrix) |
svg |
| 40 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.893e+00 | 0.0040 | 73.0 | 7.93% | 2544.3 | 5.24% | motif file (matrix) |
svg |
| 41 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-3 | -7.700e+00 | 0.0047 | 77.0 | 8.37% | 2736.5 | 5.64% | motif file (matrix) |
svg |
| 42 |
| NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer | 1e-3 | -7.674e+00 | 0.0047 | 52.0 | 5.65% | 1673.3 | 3.45% | motif file (matrix) |
svg |
| 43 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-3 | -7.629e+00 | 0.0048 | 64.0 | 6.96% | 2181.3 | 4.50% | motif file (matrix) |
svg |
| 44 |
| NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer | 1e-3 | -7.623e+00 | 0.0048 | 22.0 | 2.39% | 516.2 | 1.06% | motif file (matrix) |
svg |
| 45 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-3 | -7.579e+00 | 0.0049 | 69.0 | 7.50% | 2400.5 | 4.95% | motif file (matrix) |
svg |
| 46 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-3 | -7.479e+00 | 0.0053 | 109.0 | 11.85% | 4192.2 | 8.64% | motif file (matrix) |
svg |
| 47 |
| Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer | 1e-3 | -7.428e+00 | 0.0054 | 353.0 | 38.37% | 16121.5 | 33.23% | motif file (matrix) |
svg |
| 48 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-3 | -7.422e+00 | 0.0054 | 109.0 | 11.85% | 4199.5 | 8.66% | motif file (matrix) |
svg |
| 49 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.418e+00 | 0.0054 | 29.0 | 3.15% | 779.0 | 1.61% | motif file (matrix) |
svg |
| 50 |
| Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer | 1e-3 | -7.278e+00 | 0.0059 | 87.0 | 9.46% | 3221.4 | 6.64% | motif file (matrix) |
svg |
| 51 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-3 | -7.260e+00 | 0.0059 | 32.0 | 3.48% | 900.9 | 1.86% | motif file (matrix) |
svg |
| 52 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.221e+00 | 0.0060 | 150.0 | 16.30% | 6135.1 | 12.65% | motif file (matrix) |
svg |
| 53 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -7.105e+00 | 0.0066 | 38.0 | 4.13% | 1144.3 | 2.36% | motif file (matrix) |
svg |
| 54 |
| GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer | 1e-3 | -6.969e+00 | 0.0075 | 203.0 | 22.07% | 8723.1 | 17.98% | motif file (matrix) |
svg |
| 55 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-2 | -6.854e+00 | 0.0082 | 79.0 | 8.59% | 2910.1 | 6.00% | motif file (matrix) |
svg |
| 56 |
| Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer | 1e-2 | -6.740e+00 | 0.0090 | 128.0 | 13.91% | 5169.3 | 10.65% | motif file (matrix) |
svg |
| 57 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-2 | -6.630e+00 | 0.0099 | 64.0 | 6.96% | 2272.6 | 4.68% | motif file (matrix) |
svg |
| 58 |
| Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer | 1e-2 | -6.628e+00 | 0.0099 | 39.0 | 4.24% | 1216.5 | 2.51% | motif file (matrix) |
svg |
| 59 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.593e+00 | 0.0099 | 20.0 | 2.17% | 488.1 | 1.01% | motif file (matrix) |
svg |
| 60 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-2 | -6.532e+00 | 0.0104 | 196.0 | 21.30% | 8460.8 | 17.44% | motif file (matrix) |
svg |
| 61 |
| OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer | 1e-2 | -6.529e+00 | 0.0104 | 51.0 | 5.54% | 1722.4 | 3.55% | motif file (matrix) |
svg |
| 62 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -6.499e+00 | 0.0104 | 52.0 | 5.65% | 1768.0 | 3.64% | motif file (matrix) |
svg |
| 63 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -6.421e+00 | 0.0111 | 72.0 | 7.83% | 2645.1 | 5.45% | motif file (matrix) |
svg |
| 64 |
| EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.310e+00 | 0.0122 | 78.0 | 8.48% | 2925.4 | 6.03% | motif file (matrix) |
svg |
| 65 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-2 | -6.251e+00 | 0.0127 | 19.0 | 2.07% | 467.9 | 0.96% | motif file (matrix) |
svg |
| 66 |
| STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-2 | -6.087e+00 | 0.0147 | 96.0 | 10.43% | 3771.4 | 7.77% | motif file (matrix) |
svg |
| 67 |
| Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.967e+00 | 0.0164 | 166.0 | 18.04% | 7104.8 | 14.64% | motif file (matrix) |
svg |
| 68 |
| FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer | 1e-2 | -5.951e+00 | 0.0164 | 83.0 | 9.02% | 3193.8 | 6.58% | motif file (matrix) |
svg |
| 69 |
| TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer | 1e-2 | -5.929e+00 | 0.0165 | 112.0 | 12.17% | 4536.7 | 9.35% | motif file (matrix) |
svg |
| 70 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-2 | -5.901e+00 | 0.0167 | 223.0 | 24.24% | 9909.8 | 20.43% | motif file (matrix) |
svg |
| 71 |
| LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer | 1e-2 | -5.566e+00 | 0.0231 | 114.0 | 12.39% | 4684.6 | 9.66% | motif file (matrix) |
svg |
| 72 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -5.563e+00 | 0.0231 | 120.0 | 13.04% | 4968.7 | 10.24% | motif file (matrix) |
svg |
| 73 |
| Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer | 1e-2 | -5.359e+00 | 0.0276 | 231.0 | 25.11% | 10422.5 | 21.48% | motif file (matrix) |
svg |
| 74 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -5.310e+00 | 0.0286 | 166.0 | 18.04% | 7225.4 | 14.89% | motif file (matrix) |
svg |
| 75 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-2 | -5.130e+00 | 0.0338 | 50.0 | 5.43% | 1807.1 | 3.72% | motif file (matrix) |
svg |
| 76 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.038e+00 | 0.0365 | 32.0 | 3.48% | 1044.2 | 2.15% | motif file (matrix) |
svg |
| 77 |
| Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -5.026e+00 | 0.0365 | 39.0 | 4.24% | 1340.3 | 2.76% | motif file (matrix) |
svg |
| 78 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-2 | -4.823e+00 | 0.0441 | 89.0 | 9.67% | 3621.4 | 7.46% | motif file (matrix) |
svg |
| 79 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-2 | -4.804e+00 | 0.0444 | 165.0 | 17.93% | 7276.7 | 15.00% | motif file (matrix) |
svg |
| 80 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-2 | -4.785e+00 | 0.0447 | 191.0 | 20.76% | 8561.9 | 17.65% | motif file (matrix) |
svg |