Homer de novo Motif Results (A1_minus_A1_input_motif/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 47320
Total background sequences = 47628
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 G A T C A T G C A G T C C T A G T C A G A G T C A G C T T G C A G C T A A C G T C A G T A G C T 1e-52-1.212e+025.86%4.35%55.5bp (55.9bp)Dlx1/MA0879.1/Jaspar(0.665)
More Information | Similar Motifs Found		motif file (matrix)
2 G A C T A G T C C A T G T C G A G A T C G C A T T G C A C T G A C T G A C T G A 1e-50-1.153e+026.53%4.97%56.3bp (55.7bp)PH0078.1_Hoxd13/Jaspar(0.664)
More Information | Similar Motifs Found		motif file (matrix)
3 C T A G C T A G T C A G G C A T C A G T A G C T A G T C T C G A G A T C G A T C C T G A A G C T 1e-44-1.028e+026.25%4.81%55.3bp (56.0bp)IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer(0.673)
More Information | Similar Motifs Found		motif file (matrix)
4 T C A G A C G T C T A G C T A G G A T C C T A G T A C G C T A G G A T C C T A G A G T C G A T C 1e-43-1.004e+024.70%3.47%54.8bp (55.1bp)HES7/MA0822.1/Jaspar(0.653)
More Information | Similar Motifs Found		motif file (matrix)
5 G A T C G T A C G C T A C G A T C A T G G A C T C A G T C T G A T C A G T A G C 1e-34-7.871e+015.08%3.94%56.6bp (57.5bp)YY1/MA0095.2/Jaspar(0.634)
More Information | Similar Motifs Found		motif file (matrix)
6 G A C T T A G C G C T A C A T G T C A G G T A C T C A G G C T A C A G T T G A C T C A G T C G A 1e-29-6.903e+012.87%2.07%53.2bp (54.4bp)EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer(0.645)
More Information | Similar Motifs Found		motif file (matrix)
7 A G T C A T C G A C G T A C T G T A C G C G T A A T G C C G A T A T G C C T G A A G T C A C G T 1e-28-6.571e+010.06%0.00%59.5bp (0.0bp)VDR/MA0693.2/Jaspar(0.577)
More Information | Similar Motifs Found		motif file (matrix)
8 A T C G T C A G C G T A C T A G C T A G A G T C G A T C T C A G C T G A T A C G T C G A A G T C 1e-27-6.321e+016.44%5.28%52.8bp (54.8bp)ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer(0.744)
More Information | Similar Motifs Found		motif file (matrix)
9 A C T G A G T C G A T C G T A C C T A G C G T A A T G C C G T A A G T C G T C A A T G C G T A C 1e-25-5.913e+010.05%0.00%42.3bp (0.0bp)KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer(0.681)
More Information | Similar Motifs Found		motif file (matrix)
10 G T C A A G T C G T C A C G T A G A T C C G T A A C G T G A C T C G T A G C A T 1e-23-5.416e+011.47%0.98%57.2bp (59.3bp)PH0152.1_Pou6f1_2/Jaspar(0.665)
More Information | Similar Motifs Found		motif file (matrix)
11 C A G T T G C A C G T A C T A G A C T G C T G A T A G C C T A G C A T G A C G T C A T G G C A T 1e-23-5.328e+010.06%0.01%46.7bp (16.7bp)KLF4/MA0039.3/Jaspar(0.591)
More Information | Similar Motifs Found		motif file (matrix)
12 C G T A A C G T A C T G A G T C C G T A A C T G A C T G A C T G A G T C A C T G A C G T A C G T 1e-22-5.272e+010.05%0.00%52.8bp (0.0bp)PB0091.1_Zbtb3_1/Jaspar(0.664)
More Information | Similar Motifs Found		motif file (matrix)
13 A C G T A G T C A G T C C G T A A C G T C G A T A G T C A C T G C G T A G T A C 1e-22-5.192e+010.07%0.01%54.0bp (37.3bp)PB0028.1_Hbp1_1/Jaspar(0.679)
More Information | Similar Motifs Found		motif file (matrix)
14 A C G T C G T A C G T A A C T G A C G T A G T C C G T A A C T G A G T C A C G T 1e-21-5.060e+010.06%0.01%60.1bp (35.1bp)MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer(0.763)
More Information | Similar Motifs Found		motif file (matrix)
15 C G T A A C G T C G A T A G T C C A G T T A G C A T G C A C G T 1e-21-4.997e+0115.30%13.75%55.3bp (56.4bp)RELB/MA1117.1/Jaspar(0.734)
More Information | Similar Motifs Found		motif file (matrix)
16 A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T C G T A C G T A 1e-21-4.958e+010.05%0.00%42.4bp (17.6bp)POU5F1/MA1115.1/Jaspar(0.783)
More Information | Similar Motifs Found		motif file (matrix)
17 G A T C T C A G A C G T A C T G A C G T C G T A G T C A A C T G C G T A A C T G C G A T C G T A 1e-21-4.958e+010.05%0.00%53.6bp (0.0bp)PH0087.1_Irx6/Jaspar(0.615)
More Information | Similar Motifs Found		motif file (matrix)
18 C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T A G T C A C G T 1e-20-4.648e+010.04%0.00%54.3bp (0.5bp)PH0086.1_Irx5/Jaspar(0.648)
More Information | Similar Motifs Found		motif file (matrix)
19 C G T A A G T C T G C A A T C G A C T G A G T C C T A G G A T C 1e-19-4.582e+018.68%7.53%56.0bp (56.0bp)PB0089.1_Tcfe2a_1/Jaspar(0.736)
More Information | Similar Motifs Found		motif file (matrix)
20 G T A C C A T G T A G C G T A C G A C T A G C T C G T A C A T G T A C G C T G A T G C A C A G T 1e-19-4.533e+010.05%0.01%61.5bp (55.3bp)TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer(0.648)
More Information | Similar Motifs Found		motif file (matrix)
21 C A T G A G T C G A T C G A T C C A T G C A T G A G C T A C G T A G C T G A T C G T C A T C G A 1e-19-4.479e+010.06%0.01%51.8bp (40.1bp)CHR(?)/Hela-CellCycle-Expression/Homer(0.735)
More Information | Similar Motifs Found		motif file (matrix)
22 G A C T A G T C A G T C G T C A G T C A C T A G A C G T C G T A A T C G A C T G 1e-18-4.354e+010.22%0.08%58.5bp (48.9bp)ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer(0.605)
More Information | Similar Motifs Found		motif file (matrix)
23 A T C G A G T C G T A C G T A C G T C A C A G T C A T G T C A G C G A T T A C G T G A C A C T G 1e-18-4.248e+010.06%0.01%47.8bp (38.6bp)PB0206.1_Zic2_2/Jaspar(0.651)
More Information | Similar Motifs Found		motif file (matrix)
24 T G C A A G C T A G T C T G C A A T G C C T A G C T G A A C T G 1e-17-4.131e+0118.72%17.19%55.0bp (57.6bp)TFE3/MA0831.2/Jaspar(0.720)
More Information | Similar Motifs Found		motif file (matrix)
25 C G T A A G T C A C G T C G T A A C G T G T A C C G T A A C T G A G T C A C G T 1e-17-3.963e+010.11%0.02%54.7bp (49.3bp)TFAP4/MA0691.1/Jaspar(0.653)
More Information | Similar Motifs Found		motif file (matrix)
26 C T G A C G A T T G A C C G T A C T A G T G C A A G T C C T A G A G C T A T G C C G A T T C G A 1e-16-3.773e+010.05%0.01%53.8bp (44.4bp)PROX1/MA0794.1/Jaspar(0.622)
More Information | Similar Motifs Found		motif file (matrix)
27 A G C T T C A G A T C G A C T G C G T A A C T G A T C G A C G T 1e-15-3.573e+015.08%4.30%55.7bp (56.9bp)PB0098.1_Zfp410_1/Jaspar(0.767)
More Information | Similar Motifs Found		motif file (matrix)
28 A C G T A T C G A C T G C G T A A C G T T G A C C T G A A G T C 1e-15-3.525e+014.10%3.41%54.2bp (58.0bp)RHOXF1/MA0719.1/Jaspar(0.730)
More Information | Similar Motifs Found		motif file (matrix)
29 A C T G C G T A C G T A A C T G C G T A A C G T C G T A G T C A 1e-14-3.326e+015.91%5.10%55.5bp (56.9bp)POL008.1_DCE_S_I/Jaspar(0.741)
More Information | Similar Motifs Found		motif file (matrix)
30 C G T A A C G T C T G A A G T C A G T C A C G T A C G T A C G T 1e-14-3.254e+015.51%4.74%56.4bp (57.5bp)SD0003.1_at_AC_acceptor/Jaspar(0.678)
More Information | Similar Motifs Found		motif file (matrix)
31 A G T C C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C C G T A 1e-13-3.194e+010.08%0.02%51.0bp (44.8bp)PB0154.1_Osr1_2/Jaspar(0.608)
More Information | Similar Motifs Found		motif file (matrix)
32 C G T A A C T G C G T A A G T C A G T C A G T C C G T A A G T C A C G T C G T A 1e-13-3.050e+010.04%0.01%50.4bp (46.5bp)PB0114.1_Egr1_2/Jaspar(0.648)
More Information | Similar Motifs Found		motif file (matrix)
33 A C T G A G T C A G T C A T G C A C G T A C T G A C G T C G T A C G T A C G T A 1e-12-2.957e+010.06%0.01%53.6bp (37.9bp)PH0158.1_Rhox11_2/Jaspar(0.674)
More Information | Similar Motifs Found		motif file (matrix)
34 * C G T A C G T A A G T C A C G T A C G T C G T A A C G T C G T A A C G T A G T C 1e-11-2.592e+010.04%0.00%58.4bp (7.3bp)HLTF/MA0109.1/Jaspar(0.651)
More Information | Similar Motifs Found		motif file (matrix)
35 * A G T C A C G T A G T C C G T A C G T A A G T C A C G T C G T A A C T G A C T G 1e-11-2.592e+010.04%0.01%62.7bp (79.0bp)HMBOX1/MA0895.1/Jaspar(0.670)
More Information | Similar Motifs Found		motif file (matrix)
36 * A C G T A G T C A C T G A C T G A C T G A G T C A C T G A C G T 1e-11-2.581e+010.07%0.02%60.2bp (31.0bp)PB0143.1_Klf7_2/Jaspar(0.781)
More Information | Similar Motifs Found		motif file (matrix)
37 * A C G T A C T G A C G T A G T C A C T G A C T G A G T C A C T G 1e-10-2.371e+010.04%0.01%46.1bp (34.8bp)Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer(0.681)
More Information | Similar Motifs Found		motif file (matrix)
38 * C G T A A G T C A C G T G T C A C T G A A C G T C T A G A G T C 1e-10-2.305e+012.37%1.96%55.7bp (58.3bp)GSC/MA0648.1/Jaspar(0.711)
More Information | Similar Motifs Found		motif file (matrix)
39 * G C T A T G A C G C T A A T G C T C A G T G A C G T C A G T A C G T C A A G T C G C T A A G T C 1e-9-2.175e+011.94%1.57%64.3bp (56.4bp)PB0130.1_Gm397_2/Jaspar(0.789)
More Information | Similar Motifs Found		motif file (matrix)
40 * A C G T A G T C C G T A C G T A A G T C C G T A A C G T A G T C 1e-8-1.966e+010.93%0.70%55.3bp (54.4bp)FOXO4/MA0848.1/Jaspar(0.688)
More Information | Similar Motifs Found		motif file (matrix)
41 * G T A C C G T A A G T C A C G T A C T G C G A T A C T G A C T G C G T A C G T A A C T G T A G C 1e-8-1.946e+010.03%0.01%48.6bp (25.1bp)POL008.1_DCE_S_I/Jaspar(0.694)
More Information | Similar Motifs Found		motif file (matrix)
42 * A G T C A G T C C G T A A G T C A C G T A C T G A C T G A G T C A C G T C G T A 1e-7-1.751e+010.05%0.02%53.7bp (33.2bp)POL004.1_CCAAT-box/Jaspar(0.679)
More Information | Similar Motifs Found		motif file (matrix)
43 * A C G T C T G A C G T A A C T G C G T A A G T C A G T C A C T G 1e-7-1.701e+010.26%0.15%56.4bp (50.7bp)PH0164.1_Six4/Jaspar(0.650)
More Information | Similar Motifs Found		motif file (matrix)