| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer | 1e-13 | -3.169e+01 | 0.0000 | 4273.0 | 9.03% | 3842.4 | 8.07% | motif file (matrix) |
svg |
| 2 |
| Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer | 1e-7 | -1.650e+01 | 0.0000 | 7148.0 | 15.11% | 6790.4 | 14.26% | motif file (matrix) |
svg |
| 3 |
| Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-6 | -1.436e+01 | 0.0001 | 4820.0 | 10.19% | 4537.9 | 9.53% | motif file (matrix) |
svg |
| 4 |
| GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer | 1e-5 | -1.241e+01 | 0.0004 | 7119.0 | 15.05% | 6823.2 | 14.33% | motif file (matrix) |
svg |
| 5 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.021e+01 | 0.0032 | 4456.0 | 9.42% | 4237.4 | 8.90% | motif file (matrix) |
svg |
| 6 |
| THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer | 1e-4 | -9.992e+00 | 0.0033 | 2458.0 | 5.20% | 2289.7 | 4.81% | motif file (matrix) |
svg |
| 7 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-4 | -9.787e+00 | 0.0034 | 1415.0 | 2.99% | 1285.5 | 2.70% | motif file (matrix) |
svg |
| 8 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-3 | -9.128e+00 | 0.0058 | 1509.0 | 3.19% | 1381.6 | 2.90% | motif file (matrix) |
svg |
| 9 |
| THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer | 1e-3 | -9.078e+00 | 0.0058 | 2662.0 | 5.63% | 2498.5 | 5.25% | motif file (matrix) |
svg |
| 10 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-3 | -9.011e+00 | 0.0058 | 2733.0 | 5.78% | 2568.2 | 5.39% | motif file (matrix) |
svg |
| 11 |
| ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer | 1e-3 | -8.925e+00 | 0.0058 | 1236.0 | 2.61% | 1121.0 | 2.35% | motif file (matrix) |
svg |
| 12 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-3 | -7.625e+00 | 0.0174 | 22705.0 | 48.01% | 22500.7 | 47.25% | motif file (matrix) |
svg |
| 13 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-3 | -7.431e+00 | 0.0195 | 2728.0 | 5.77% | 2584.9 | 5.43% | motif file (matrix) |
svg |
| 14 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-3 | -7.055e+00 | 0.0264 | 12.0 | 0.03% | 4.9 | 0.01% | motif file (matrix) |
svg |
| 15 |
| LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.655e+00 | 0.0367 | 938.0 | 1.98% | 855.6 | 1.80% | motif file (matrix) |
svg |
| 16 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-2 | -6.602e+00 | 0.0367 | 7105.0 | 15.02% | 6921.5 | 14.53% | motif file (matrix) |
svg |
| 17 |
| ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -6.545e+00 | 0.0367 | 775.0 | 1.64% | 700.7 | 1.47% | motif file (matrix) |
svg |
| 18 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.517e+00 | 0.0367 | 635.0 | 1.34% | 567.4 | 1.19% | motif file (matrix) |
svg |
| 19 |
| YY1(Zf)/Promoter/Homer | 1e-2 | -6.499e+00 | 0.0367 | 198.0 | 0.42% | 160.1 | 0.34% | motif file (matrix) |
svg |
| 20 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-2 | -6.439e+00 | 0.0367 | 13239.0 | 27.99% | 13042.0 | 27.39% | motif file (matrix) |
svg |
| 21 |
| Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer | 1e-2 | -6.412e+00 | 0.0367 | 13799.0 | 29.18% | 13602.5 | 28.56% | motif file (matrix) |
svg |
| 22 |
| Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-2 | -6.135e+00 | 0.0421 | 213.0 | 0.45% | 175.9 | 0.37% | motif file (matrix) |
svg |
| 23 |
| ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.794e+00 | 0.0567 | 50.0 | 0.11% | 33.3 | 0.07% | motif file (matrix) |
svg |
| 24 |
| RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer | 1e-2 | -5.729e+00 | 0.0579 | 15397.0 | 32.56% | 15224.0 | 31.97% | motif file (matrix) |
svg |
| 25 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.556e+00 | 0.0662 | 1388.0 | 2.93% | 1301.3 | 2.73% | motif file (matrix) |
svg |
| 26 |
| ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.511e+00 | 0.0665 | 197.0 | 0.42% | 163.4 | 0.34% | motif file (matrix) |
svg |
| 27 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.384e+00 | 0.0728 | 2133.0 | 4.51% | 2031.8 | 4.27% | motif file (matrix) |
svg |
| 28 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.355e+00 | 0.0728 | 6905.0 | 14.60% | 6753.7 | 14.18% | motif file (matrix) |
svg |
| 29 |
| MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer | 1e-2 | -5.199e+00 | 0.0815 | 7357.0 | 15.56% | 7207.4 | 15.14% | motif file (matrix) |
svg |
| 30 |
| SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-2 | -4.765e+00 | 0.1216 | 1041.0 | 2.20% | 973.9 | 2.05% | motif file (matrix) |
svg |
| 31 |
| Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer | 1e-2 | -4.752e+00 | 0.1216 | 4515.0 | 9.55% | 4394.1 | 9.23% | motif file (matrix) |
svg |
| 32 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-2 | -4.744e+00 | 0.1216 | 8226.0 | 17.39% | 8086.7 | 16.98% | motif file (matrix) |
svg |
| 33 |
| MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer | 1e-2 | -4.733e+00 | 0.1216 | 1716.0 | 3.63% | 1632.0 | 3.43% | motif file (matrix) |
svg |
| 34 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-2 | -4.611e+00 | 0.1251 | 1425.0 | 3.01% | 1349.1 | 2.83% | motif file (matrix) |
svg |