Homer de novo Motif Results (A4_minus_A5_input_motif/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 3537
Total background sequences = 46634
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C G A T T C G A C G T A C T A G A C G T A T C G C T G A A T G C G A C T G A C T 1e-25-5.936e+0141.59%33.05%53.4bp (59.2bp)ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer(0.644)
More Information | Similar Motifs Found
motif file (matrix)
2 T G A C G A C T A G T C G C A T T G C A C T G A C T A G C A T G A T C G T C G A 1e-17-3.926e+0137.43%30.71%56.1bp (58.5bp)Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer(0.627)
More Information | Similar Motifs Found
motif file (matrix)
3 G T A C G C T A C G T A A C G T A C G T G T C A G T A C A C G T A C G T A G T C C G T A C G T A 1e-16-3.792e+010.42%0.02%47.1bp (51.9bp)PH0009.1_Bsx/Jaspar(0.716)
More Information | Similar Motifs Found
motif file (matrix)
4 C G A T A G C T C T G A A T C G G A C T G T A C A G T C C G T A T C G A G T C A 1e-16-3.709e+015.12%2.61%54.4bp (56.5bp)PB0096.1_Zfp187_1/Jaspar(0.662)
More Information | Similar Motifs Found
motif file (matrix)
5 C A G T C A T G C A T G G C A T A G T C G C A T A C T G T A G C G A T C G C A T A G C T G T C A 1e-15-3.653e+019.05%5.61%55.0bp (58.3bp)Hand1::Tcf3/MA0092.1/Jaspar(0.651)
More Information | Similar Motifs Found
motif file (matrix)
6 C T A G A G C T A C T G C T A G A C T G C G A T T A G C C G T A A C T G G A T C C A G T A T G C 1e-15-3.468e+012.54%0.96%53.9bp (58.5bp)MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer(0.680)
More Information | Similar Motifs Found
motif file (matrix)
7 G A C T C G A T C T G A G T C A C T G A A T C G A C T G C T A G 1e-14-3.409e+0151.57%44.94%55.8bp (59.2bp)BARHL2/MA0635.1/Jaspar(0.741)
More Information | Similar Motifs Found
motif file (matrix)
8 C G T A G T A C A C G T C A T G C G A T G A C T C G T A C T A G T G C A A C G T 1e-14-3.335e+0110.12%6.62%55.5bp (58.5bp)BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer(0.633)
More Information | Similar Motifs Found
motif file (matrix)
9 T A C G A C G T A G T C A C G T A G T C C G A T A T C G A T G C A C G T A T G C A G C T C T G A 1e-13-3.204e+010.85%0.14%53.9bp (59.1bp)ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer(0.640)
More Information | Similar Motifs Found
motif file (matrix)
10 C T A G G C A T T G C A C T G A G T A C G A T C G T C A G T A C G T A C G T C A T G C A T C G A 1e-13-3.143e+0110.09%6.69%53.4bp (57.0bp)ZBTB7B/MA0694.1/Jaspar(0.699)
More Information | Similar Motifs Found
motif file (matrix)
11 C A G T C A T G G T C A C A G T C A G T A G T C G T C A A G C T G C A T A C G T T C A G C G T A 1e-13-3.081e+012.52%1.01%54.5bp (59.2bp)FOS/MA0476.1/Jaspar(0.714)
More Information | Similar Motifs Found
motif file (matrix)
12 C G T A C G T A G A C T C G A T A T C G G A C T G A C T C G A T C T A G C T A G G C T A T G A C 1e-13-3.013e+010.28%0.01%57.9bp (22.9bp)PB0165.1_Sox11_2/Jaspar(0.751)
More Information | Similar Motifs Found
motif file (matrix)
13 T A C G G A T C C G T A A C T G C T A G A C T G C T A G C T A G C G T A A C G T A C T G C T G A 1e-12-2.906e+010.42%0.03%41.1bp (43.1bp)PB0124.1_Gabpa_2/Jaspar(0.668)
More Information | Similar Motifs Found
motif file (matrix)
14 A C T G A G T C T G A C C G T A A G T C G C T A G C T A C G T A 1e-12-2.899e+0140.09%34.25%55.6bp (59.3bp)CDX2/MA0465.1/Jaspar(0.802)
More Information | Similar Motifs Found
motif file (matrix)
15 C G A T A T C G G C T A T G C A C G A T A G T C G A T C G A T C A G C T G C A T G A C T A T G C 1e-12-2.885e+012.32%0.93%53.6bp (57.1bp)PH0137.1_Pitx1/Jaspar(0.677)
More Information | Similar Motifs Found
motif file (matrix)
16 G C T A G T A C A G C T A C T G G C A T T C G A A G C T C G A T 1e-12-2.819e+0110.66%7.34%57.1bp (59.2bp)PB0068.1_Sox1_1/Jaspar(0.674)
More Information | Similar Motifs Found
motif file (matrix)
17 C G T A C T A G C G A T A C T G A G T C A C G T A C G T A T C G A G C T A C G T A C T G T C G A 1e-12-2.817e+010.37%0.02%50.0bp (67.5bp)Foxj2/MA0614.1/Jaspar(0.635)
More Information | Similar Motifs Found
motif file (matrix)
18 C G T A G T C A C G A T A T G C T A G C G A T C A G T C A C G T A G T C A G T C T C G A A G C T 1e-12-2.817e+010.37%0.02%38.6bp (45.2bp)PH0129.1_Otx1/Jaspar(0.657)
More Information | Similar Motifs Found
motif file (matrix)
19 * A T C G A G T C C G A T C A T G C T A G T A C G C A G T A T C G G T A C G A T C G C A T A G T C 1e-11-2.711e+013.31%1.62%50.8bp (56.1bp)Nkx2-5(var.2)/MA0503.1/Jaspar(0.592)
More Information | Similar Motifs Found
motif file (matrix)
20 * G A C T A G C T C G T A C T A G C T A G C G A T A C G T G C T A T G A C G A T C G C A T A C G T 1e-11-2.584e+016.98%4.44%56.9bp (58.7bp)SIX1/MA1118.1/Jaspar(0.674)
More Information | Similar Motifs Found
motif file (matrix)
21 * A G C T A T C G C G T A A C T G C G T A C G T A C G T A C G T A A C G T A G T C C G T A A G T C 1e-11-2.584e+010.23%0.01%48.8bp (14.8bp)Gfi1/MA0038.1/Jaspar(0.637)
More Information | Similar Motifs Found
motif file (matrix)
22 * G A T C C G A T G A T C C T G A A G T C G A T C T G C A T G C A T G C A A G C T 1e-11-2.544e+012.52%1.12%57.2bp (57.5bp)SREBF1/MA0595.1/Jaspar(0.697)
More Information | Similar Motifs Found
motif file (matrix)
23 * T G A C T A G C C A G T C T A G T G C A G T C A C T A G C T A G G T C A C T A G 1e-11-2.533e+014.58%2.59%56.5bp (60.4bp)THAP1/MA0597.1/Jaspar(0.607)
More Information | Similar Motifs Found
motif file (matrix)
24 * A G T C G T C A G A C T A C G T T A G C C G T A A G C T A T C G T C A G C G T A 1e-10-2.491e+011.47%0.50%57.4bp (55.2bp)PB0178.1_Sox8_2/Jaspar(0.770)
More Information | Similar Motifs Found
motif file (matrix)
25 * A T G C C G T A G C T A C T G A C G A T T G A C T C G A G A C T T A C G C A G T 1e-10-2.458e+015.71%3.49%52.9bp (59.5bp)PH0037.1_Hdx/Jaspar(0.646)
More Information | Similar Motifs Found
motif file (matrix)
26 * C A G T A G T C A G C T A C G T G T A C C A T G G C T A C G T A T A C G A C T G 1e-10-2.359e+010.79%0.17%47.8bp (55.7bp)PB0006.1_Bcl6b_1/Jaspar(0.665)
More Information | Similar Motifs Found
motif file (matrix)
27 * C T G A C G A T A T G C T A G C G A T C G C T A G A T C T C A G G C A T C G T A 1e-10-2.342e+012.46%1.13%54.7bp (58.9bp)Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer(0.703)
More Information | Similar Motifs Found
motif file (matrix)
28 * A C T G G A T C C G A T G A C T C T G A T G C A A G T C G T A C G C A T G A T C C G T A T A G C 1e-10-2.315e+011.67%0.64%51.6bp (57.9bp)THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer(0.602)
More Information | Similar Motifs Found
motif file (matrix)
29 * A T G C A G T C G T C A G A C T T C A G G A T C T C A G T C G A T C A G A G T C 1e-9-2.272e+011.47%0.53%47.3bp (60.1bp)USF1/MA0093.2/Jaspar(0.646)
More Information | Similar Motifs Found
motif file (matrix)
30 * T C G A C G T A T G C A T C A G T G A C T G C A T G A C G A C T T A G C A T G C 1e-9-2.263e+011.89%0.78%61.6bp (61.0bp)Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer(0.663)
More Information | Similar Motifs Found
motif file (matrix)
31 * A C G T C G T A A C T G A C T G A G T C A G T C A C G T A C G T C G T A A C T G G T A C A C T G 1e-9-2.212e+010.17%0.00%60.3bp (0.0bp)ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer(0.748)
More Information | Similar Motifs Found
motif file (matrix)
32 * T G C A A G T C T A C G C G T A C G T A T G C A A G C T A C T G 1e-9-2.201e+0121.09%17.05%57.2bp (59.9bp)EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer(0.691)
More Information | Similar Motifs Found
motif file (matrix)
33 * A C G T C G T A A C T G C G T A A C G T A C G T A G T C C G T A A G T C A G T C 1e-8-1.909e+010.20%0.01%48.1bp (35.3bp)RELB/MA1117.1/Jaspar(0.656)
More Information | Similar Motifs Found
motif file (matrix)
34 * C G T A A G T C C G T A A C T G A C G T A C T G C G T A A G T C A C G T C G T A A C G T A C T G 1e-7-1.803e+010.17%0.01%44.3bp (32.2bp)Pax2/MA0067.1/Jaspar(0.621)
More Information | Similar Motifs Found
motif file (matrix)
35 * T A C G A G T C A G T C A C G T A C T G A G T C A C T G A G T C C G T A A G T C 1e-6-1.444e+010.20%0.01%55.5bp (43.7bp)NRF1/MA0506.1/Jaspar(0.784)
More Information | Similar Motifs Found
motif file (matrix)
36 * G T C A A G T C A G T C C G T A C G T A A G T C A C G T A C T G A C T G C G T A 1e-6-1.398e+010.37%0.07%41.1bp (62.4bp)MYB/MA0100.3/Jaspar(0.774)
More Information | Similar Motifs Found
motif file (matrix)
37 * A C T G A G T C A T C G A G T C A T C G C G T A A G T C A C T G A C T G A G T C 1e-3-7.564e+000.08%0.01%40.6bp (47.4bp)PB0191.1_Tcfap2c_2/Jaspar(0.658)
More Information | Similar Motifs Found
motif file (matrix)
38 * A C G T A G T C C G T A A G T C C G T A A G T C C G T A A C G T A C T G A G T C A G T C C G T A 1e-2-6.404e+000.08%0.01%42.2bp (61.5bp)TBX1/MA0805.1/Jaspar(0.699)
More Information | Similar Motifs Found
motif file (matrix)