| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-4 | -1.115e+01 | 0.0061 | 1771.0 | 50.07% | 21709.0 | 46.55% | motif file (matrix) |
svg |
| 2 |
| GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer | 1e-3 | -9.084e+00 | 0.0243 | 451.0 | 12.75% | 5023.5 | 10.77% | motif file (matrix) |
svg |
| 3 |
| Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.947e+00 | 0.0505 | 87.0 | 2.46% | 779.1 | 1.67% | motif file (matrix) |
svg |
| 4 |
| Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer | 1e-3 | -7.680e+00 | 0.0505 | 274.0 | 7.75% | 2955.2 | 6.34% | motif file (matrix) |
svg |
| 5 |
| Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer | 1e-3 | -7.644e+00 | 0.0505 | 145.0 | 4.10% | 1438.1 | 3.08% | motif file (matrix) |
svg |
| 6 |
| Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer | 1e-3 | -7.574e+00 | 0.0505 | 45.0 | 1.27% | 346.9 | 0.74% | motif file (matrix) |
svg |
| 7 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-3 | -7.291e+00 | 0.0505 | 829.0 | 23.44% | 9887.1 | 21.20% | motif file (matrix) |
svg |
| 8 |
| TATA-Box(TBP)/Promoter/Homer | 1e-2 | -6.277e+00 | 0.1005 | 530.0 | 14.98% | 6200.0 | 13.29% | motif file (matrix) |
svg |
| 9 |
| IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer | 1e-2 | -6.178e+00 | 0.1005 | 57.0 | 1.61% | 499.5 | 1.07% | motif file (matrix) |
svg |
| 10 |
| LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.032e+00 | 0.1027 | 28.0 | 0.79% | 203.4 | 0.44% | motif file (matrix) |
svg |
| 11 |
| Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer | 1e-2 | -5.879e+00 | 0.1089 | 307.0 | 8.68% | 3460.4 | 7.42% | motif file (matrix) |
svg |
| 12 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -5.722e+00 | 0.1168 | 341.0 | 9.64% | 3889.4 | 8.34% | motif file (matrix) |
svg |
| 13 |
| Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.577e+00 | 0.1246 | 110.0 | 3.11% | 1112.7 | 2.39% | motif file (matrix) |
svg |
| 14 |
| Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.565e+00 | 0.1246 | 237.0 | 6.70% | 2625.4 | 5.63% | motif file (matrix) |
svg |
| 15 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer | 1e-2 | -5.533e+00 | 0.1246 | 356.0 | 10.07% | 4088.6 | 8.77% | motif file (matrix) |
svg |
| 16 |
| LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer | 1e-2 | -5.439e+00 | 0.1246 | 432.0 | 12.21% | 5041.7 | 10.81% | motif file (matrix) |
svg |
| 17 |
| AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-2 | -5.415e+00 | 0.1246 | 290.0 | 8.20% | 3282.5 | 7.04% | motif file (matrix) |
svg |
| 18 |
| Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer | 1e-2 | -5.364e+00 | 0.1246 | 33.0 | 0.93% | 264.6 | 0.57% | motif file (matrix) |
svg |
| 19 |
| PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer | 1e-2 | -5.296e+00 | 0.1246 | 110.0 | 3.11% | 1123.1 | 2.41% | motif file (matrix) |
svg |
| 20 |
| DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer | 1e-2 | -5.158e+00 | 0.1246 | 29.0 | 0.82% | 227.6 | 0.49% | motif file (matrix) |
svg |
| 21 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -5.044e+00 | 0.1314 | 159.0 | 4.50% | 1713.4 | 3.67% | motif file (matrix) |
svg |
| 22 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -4.874e+00 | 0.1486 | 391.0 | 11.05% | 4575.6 | 9.81% | motif file (matrix) |
svg |
| 23 |
| PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-2 | -4.844e+00 | 0.1486 | 359.0 | 10.15% | 4178.9 | 8.96% | motif file (matrix) |
svg |
| 24 |
| Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer | 1e-2 | -4.837e+00 | 0.1486 | 241.0 | 6.81% | 2719.3 | 5.83% | motif file (matrix) |
svg |
| 25 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-2 | -4.755e+00 | 0.1486 | 365.0 | 10.32% | 4260.3 | 9.13% | motif file (matrix) |
svg |
| 26 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -4.732e+00 | 0.1486 | 516.0 | 14.59% | 6160.3 | 13.21% | motif file (matrix) |
svg |
| 27 |
| NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer | 1e-2 | -4.610e+00 | 0.1577 | 222.0 | 6.28% | 2501.3 | 5.36% | motif file (matrix) |
svg |