Information for 24-ACASACAGAC (Motif 38)


Reverse Opposite:

p-value:1e-1
log p-value:-4.424e+00
Information Content per bp:1.798
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif2162.0
Percentage of Background Sequences with motif2.16%
Average Position of motif in Targets172.5 +/- 23.1bp
Average Position of motif in Background98.6 +/- 84.1bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:ACASACAGAC----
----CCAGACRSVB

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ACASACAGAC-
AGGTGHCAGACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:ACASACAGAC--
----CCAGACAG

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:ACASACAGAC
---CACAGN-

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ACASACAGAC------
CAAATCCAGACATCACA

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ACASACAGAC-
-ATGCCAGACN

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ACASACAGAC-----
AGCAACAGCCGCACC

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:ACASACAGAC--
----BCAGACWA

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACASACAGAC
-TTGACAG--

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ACASACAGAC--
AGGTGNCAGACAG