| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-458 | -1.055e+03 | 0.0000 | 2652.0 | 20.46% | 2409.2 | 7.73% | motif file (matrix) |
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| 2 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-440 | -1.015e+03 | 0.0000 | 2219.0 | 17.12% | 1826.8 | 5.86% | motif file (matrix) |
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| 3 |  | TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-320 | -7.375e+02 | 0.0000 | 1717.0 | 13.24% | 1451.2 | 4.66% | motif file (matrix) |
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| 4 |  | AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-79 | -1.833e+02 | 0.0000 | 1665.0 | 12.84% | 2484.5 | 7.97% | motif file (matrix) |
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| 5 |  | AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-76 | -1.772e+02 | 0.0000 | 1983.0 | 15.30% | 3130.9 | 10.05% | motif file (matrix) |
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| 6 |  | Sp1(Zf)/Promoter/Homer | 1e-58 | -1.356e+02 | 0.0000 | 525.0 | 4.05% | 572.0 | 1.84% | motif file (matrix) |
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| 7 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-36 | -8.439e+01 | 0.0000 | 563.0 | 4.34% | 758.3 | 2.43% | motif file (matrix) |
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| 8 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-31 | -7.223e+01 | 0.0000 | 423.0 | 3.26% | 545.8 | 1.75% | motif file (matrix) |
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| 9 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-26 | -6.194e+01 | 0.0000 | 939.0 | 7.24% | 1568.9 | 5.03% | motif file (matrix) |
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| 10 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-25 | -5.804e+01 | 0.0000 | 811.0 | 6.26% | 1331.4 | 4.27% | motif file (matrix) |
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| 11 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-23 | -5.432e+01 | 0.0000 | 941.0 | 7.26% | 1613.9 | 5.18% | motif file (matrix) |
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| 12 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-23 | -5.310e+01 | 0.0000 | 314.0 | 2.42% | 407.7 | 1.31% | motif file (matrix) |
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| 13 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-19 | -4.453e+01 | 0.0000 | 1037.0 | 8.00% | 1872.7 | 6.01% | motif file (matrix) |
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| 14 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-17 | -3.965e+01 | 0.0000 | 2311.0 | 17.82% | 4697.5 | 15.07% | motif file (matrix) |
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| 15 |  | Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-17 | -3.945e+01 | 0.0000 | 811.0 | 6.26% | 1434.1 | 4.60% | motif file (matrix) |
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| 16 |  | GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-16 | -3.716e+01 | 0.0000 | 520.0 | 4.01% | 855.2 | 2.74% | motif file (matrix) |
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| 17 |  | p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-15 | -3.577e+01 | 0.0000 | 192.0 | 1.48% | 242.7 | 0.78% | motif file (matrix) |
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| 18 |  | p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-15 | -3.577e+01 | 0.0000 | 192.0 | 1.48% | 242.7 | 0.78% | motif file (matrix) |
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| 19 |  | Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-13 | -3.023e+01 | 0.0000 | 876.0 | 6.76% | 1635.0 | 5.25% | motif file (matrix) |
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| 20 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-11 | -2.710e+01 | 0.0000 | 343.0 | 2.65% | 554.3 | 1.78% | motif file (matrix) |
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| 21 |  | Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-11 | -2.642e+01 | 0.0000 | 79.0 | 0.61% | 78.0 | 0.25% | motif file (matrix) |
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| 22 |  | Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-11 | -2.583e+01 | 0.0000 | 81.0 | 0.62% | 82.3 | 0.26% | motif file (matrix) |
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| 23 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-11 | -2.563e+01 | 0.0000 | 831.0 | 6.41% | 1576.3 | 5.06% | motif file (matrix) |
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| 24 |  | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-10 | -2.515e+01 | 0.0000 | 134.0 | 1.03% | 170.2 | 0.55% | motif file (matrix) |
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| 25 |  | Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-10 | -2.497e+01 | 0.0000 | 1311.0 | 10.11% | 2630.4 | 8.44% | motif file (matrix) |
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| 26 |  | STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer | 1e-10 | -2.492e+01 | 0.0000 | 407.0 | 3.14% | 693.9 | 2.23% | motif file (matrix) |
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| 27 |  | NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-10 | -2.464e+01 | 0.0000 | 88.0 | 0.68% | 95.4 | 0.31% | motif file (matrix) |
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| 28 |  | Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-10 | -2.323e+01 | 0.0000 | 1017.0 | 7.84% | 2001.6 | 6.42% | motif file (matrix) |
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| 29 |  | p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-9 | -2.091e+01 | 0.0000 | 530.0 | 4.09% | 973.0 | 3.12% | motif file (matrix) |
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| 30 |  | ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer | 1e-8 | -1.874e+01 | 0.0000 | 1881.0 | 14.51% | 3993.3 | 12.81% | motif file (matrix) |
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| 31 |  | CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-7 | -1.799e+01 | 0.0000 | 243.0 | 1.87% | 401.8 | 1.29% | motif file (matrix) |
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| 32 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-7 | -1.723e+01 | 0.0000 | 452.0 | 3.49% | 836.0 | 2.68% | motif file (matrix) |
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| 33 |  | TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-7 | -1.638e+01 | 0.0000 | 163.0 | 1.26% | 252.9 | 0.81% | motif file (matrix) |
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| 34 |  | STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer | 1e-6 | -1.588e+01 | 0.0000 | 327.0 | 2.52% | 584.7 | 1.88% | motif file (matrix) |
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| 35 |  | RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer | 1e-6 | -1.580e+01 | 0.0000 | 1356.0 | 10.46% | 2845.7 | 9.13% | motif file (matrix) |
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| 36 |  | Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.541e+01 | 0.0000 | 165.0 | 1.27% | 261.0 | 0.84% | motif file (matrix) |
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| 37 |  | Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.524e+01 | 0.0000 | 568.0 | 4.38% | 1101.7 | 3.53% | motif file (matrix) |
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| 38 |  | PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-6 | -1.498e+01 | 0.0000 | 1283.0 | 9.90% | 2692.9 | 8.64% | motif file (matrix) |
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| 39 |  | RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-6 | -1.473e+01 | 0.0000 | 1489.0 | 11.48% | 3163.7 | 10.15% | motif file (matrix) |
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| 40 |  | HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-6 | -1.459e+01 | 0.0000 | 579.0 | 4.47% | 1131.4 | 3.63% | motif file (matrix) |
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| 41 |  | GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-6 | -1.434e+01 | 0.0000 | 1961.0 | 15.13% | 4250.5 | 13.64% | motif file (matrix) |
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| 42 |  | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-5 | -1.367e+01 | 0.0000 | 578.0 | 4.46% | 1138.3 | 3.65% | motif file (matrix) |
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| 43 |  | NRF(NRF)/Promoter/Homer | 1e-4 | -1.096e+01 | 0.0001 | 222.0 | 1.71% | 399.8 | 1.28% | motif file (matrix) |
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| 44 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-4 | -1.026e+01 | 0.0002 | 263.0 | 2.03% | 490.6 | 1.57% | motif file (matrix) |
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| 45 |  | Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-4 | -1.003e+01 | 0.0003 | 247.0 | 1.91% | 458.4 | 1.47% | motif file (matrix) |
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| 46 |  | EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-3 | -9.011e+00 | 0.0007 | 1438.0 | 11.09% | 3149.8 | 10.11% | motif file (matrix) |
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| 47 |  | GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.818e+00 | 0.0008 | 106.0 | 0.82% | 175.7 | 0.56% | motif file (matrix) |
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| 48 |  | GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.803e+00 | 0.0008 | 234.0 | 1.80% | 440.1 | 1.41% | motif file (matrix) |
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| 49 |  | NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-3 | -8.687e+00 | 0.0009 | 76.0 | 0.59% | 117.8 | 0.38% | motif file (matrix) |
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| 50 |  | Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-3 | -8.444e+00 | 0.0011 | 437.0 | 3.37% | 885.7 | 2.84% | motif file (matrix) |
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| 51 |  | GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.428e+00 | 0.0011 | 101.0 | 0.78% | 167.1 | 0.54% | motif file (matrix) |
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| 52 |  | Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer | 1e-3 | -8.230e+00 | 0.0014 | 1455.0 | 11.22% | 3205.5 | 10.29% | motif file (matrix) |
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| 53 |  | ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer | 1e-3 | -8.041e+00 | 0.0016 | 2615.0 | 20.17% | 5916.8 | 18.98% | motif file (matrix) |
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| 54 |  | E-box(bHLH)/Promoter/Homer | 1e-3 | -7.679e+00 | 0.0023 | 109.0 | 0.84% | 187.2 | 0.60% | motif file (matrix) |
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| 55 |  | TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-3 | -7.455e+00 | 0.0028 | 86.0 | 0.66% | 142.5 | 0.46% | motif file (matrix) |
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| 56 |  | HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer | 1e-3 | -7.424e+00 | 0.0028 | 216.0 | 1.67% | 413.5 | 1.33% | motif file (matrix) |
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| 57 |  | CRE(bZIP)/Promoter/Homer | 1e-2 | -6.903e+00 | 0.0047 | 237.0 | 1.83% | 463.9 | 1.49% | motif file (matrix) |
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| 58 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer | 1e-2 | -6.747e+00 | 0.0053 | 885.0 | 6.83% | 1923.9 | 6.17% | motif file (matrix) |
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| 59 |  | Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-2 | -6.276e+00 | 0.0084 | 462.0 | 3.56% | 969.7 | 3.11% | motif file (matrix) |
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| 60 |  | STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer | 1e-2 | -6.242e+00 | 0.0086 | 515.0 | 3.97% | 1089.4 | 3.50% | motif file (matrix) |
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| 61 |  | NFY(CCAAT)/Promoter/Homer | 1e-2 | -5.887e+00 | 0.0120 | 890.0 | 6.86% | 1952.3 | 6.26% | motif file (matrix) |
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| 62 |  | CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.959e+00 | 0.0299 | 957.0 | 7.38% | 2128.2 | 6.83% | motif file (matrix) |
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| 63 |  | GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-2 | -4.644e+00 | 0.0403 | 141.0 | 1.09% | 276.3 | 0.89% | motif file (matrix) |
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