Homer Known Motif Enrichment Results (output_directory/)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 90, Total Background Sequences = 43818
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File SVG
1 A C G T T C G A T C G A A G T C G T C A T A C G A T G C A C G T A C T G A G C T Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-63-1.468e+020.000073.081.11%3387.17.73%motif file (matrix) svg
2 C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer1e-56-1.308e+020.000070.077.78%3622.78.27%motif file (matrix) svg
3 G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer1e-53-1.228e+020.000071.078.89%4288.19.79%motif file (matrix) svg
4 T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-51-1.185e+020.000073.081.11%5041.711.51%motif file (matrix) svg
5 G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-46-1.065e+020.000073.081.11%5976.013.64%motif file (matrix) svg
6 C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer1e-43-1.011e+020.000067.074.44%4867.611.11%motif file (matrix) svg
7 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer1e-34-7.840e+010.000069.076.67%7577.217.30%motif file (matrix) svg
8 C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer1e-33-7.699e+010.000068.075.56%7424.316.95%motif file (matrix) svg
9 C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer1e-30-7.119e+010.000052.057.78%3838.98.76%motif file (matrix) svg
10 A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer1e-30-7.071e+010.000046.051.11%2720.76.21%motif file (matrix) svg
11 G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer1e-27-6.221e+010.000046.051.11%3317.57.57%motif file (matrix) svg
12 G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer1e-25-5.853e+010.000036.040.00%1825.84.17%motif file (matrix) svg
13 A T C G A T C G A T G C G A C T T C G A C G T A G C A T A G C T C T G A T A C G DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer1e-24-5.671e+010.000061.067.78%7796.817.80%motif file (matrix) svg
14 T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-24-5.643e+010.000047.052.22%4025.29.19%motif file (matrix) svg
15 T C A G C T A G A T G C G A C T T G C A C G T A A G C T A C G T C T G A T A C G En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer1e-23-5.503e+010.000065.072.22%9420.321.51%motif file (matrix) svg
16 T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer1e-23-5.459e+010.000071.078.89%11852.927.06%motif file (matrix) svg
17 C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer1e-23-5.369e+010.000037.041.11%2275.25.19%motif file (matrix) svg
18 T G A C A G T C C T G A T G A C C G T A A C G T A C G T A G T C A G T C C G T A TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer1e-22-5.258e+010.000047.052.22%4406.410.06%motif file (matrix) svg
19 C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer1e-22-5.184e+010.000036.040.00%2229.45.09%motif file (matrix) svg
20 A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer1e-21-5.055e+010.000072.080.00%13071.529.84%motif file (matrix) svg
21 T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer1e-21-4.867e+010.000034.037.78%2104.54.80%motif file (matrix) svg
22 T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T A G T C Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-20-4.670e+010.000074.082.22%14838.133.88%motif file (matrix) svg
23 A G C T C T A G T G A C C G T A A C G T C G A T A G T C A G T C C T G A C A T G TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer1e-19-4.552e+010.000047.052.22%5216.911.91%motif file (matrix) svg
24 A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer1e-19-4.482e+010.000037.041.11%2959.86.76%motif file (matrix) svg
25 T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer1e-18-4.370e+010.000064.071.11%11077.925.29%motif file (matrix) svg
26 C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-17-3.974e+010.000083.092.22%21848.249.88%motif file (matrix) svg
27 A G T C C T A G C T A G A G T C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer1e-15-3.664e+010.000040.044.44%4539.710.36%motif file (matrix) svg
28 C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-14-3.312e+010.000015.016.67%389.50.89%motif file (matrix) svg
29 G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer1e-14-3.311e+010.000033.036.67%3281.87.49%motif file (matrix) svg
30 A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer1e-14-3.277e+010.000047.052.22%7163.616.36%motif file (matrix) svg
31 T C A G C T A G C T A G A C T G A C T G G A T C A C T G A C T G C T A G C T A G A G T C G A T C KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer1e-14-3.273e+010.000030.033.33%2667.96.09%motif file (matrix) svg
32 T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer1e-14-3.225e+010.000030.033.33%2716.56.20%motif file (matrix) svg
33 G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer1e-13-3.173e+010.000036.040.00%4178.19.54%motif file (matrix) svg
34 A G C T T G A C C G A T C G A T C T A G A C G T C A G T C A G T G C T A A G T C FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer1e-13-3.003e+010.000036.040.00%4419.410.09%motif file (matrix) svg
35 A T C G A T G C A G T C T A G C G A C T T C G A G C T A G C A T A G C T C T G A DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer1e-13-2.995e+010.000045.050.00%7057.016.11%motif file (matrix) svg
36 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-12-2.906e+010.000075.083.33%20110.145.91%motif file (matrix) svg
37 G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer1e-12-2.886e+010.000072.080.00%18530.242.31%motif file (matrix) svg
38 A T G C T A C G A G C T T G C A C G T A C G A T A C G T C T G A DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer1e-12-2.859e+010.000033.036.67%3853.88.80%motif file (matrix) svg
39 C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer1e-11-2.740e+010.000034.037.78%4283.29.78%motif file (matrix) svg
40 C G T A A C T G C G T A A C G T A T C G C A G T T A G C C G T A T C G A G T A C C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A A T C G G C T A GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-11-2.683e+010.000012.013.33%306.20.70%motif file (matrix) svg
41 G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer1e-11-2.609e+010.000017.018.89%900.62.06%motif file (matrix) svg
42 T G C A C T G A A T G C G T C A A C G T A T G C A C G T A C T G A C T G T G C A ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer1e-11-2.598e+010.000025.027.78%2326.25.31%motif file (matrix) svg
43 C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer1e-10-2.479e+010.000015.016.67%701.41.60%motif file (matrix) svg
44 T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer1e-10-2.455e+010.000030.033.33%3673.98.39%motif file (matrix) svg
45 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer1e-10-2.344e+010.000044.048.89%8121.918.54%motif file (matrix) svg
46 C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer1e-9-2.226e+010.000016.017.78%994.92.27%motif file (matrix) svg
47 T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer1e-9-2.136e+010.000026.028.89%3140.37.17%motif file (matrix) svg
48 T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer1e-6-1.585e+010.000015.016.67%1368.43.12%motif file (matrix) svg
49 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer1e-6-1.525e+010.000014.015.56%1234.62.82%motif file (matrix) svg
50 T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G NFY(CCAAT)/Promoter/Homer1e-6-1.518e+010.000022.024.44%3117.67.12%motif file (matrix) svg
51 C G A T C T A G A C G T A C G T A C G T C G T A A G C T C G A T A G C T C G T A C T A G T A G C FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer1e-6-1.475e+010.000023.025.56%3473.17.93%motif file (matrix) svg
52 T G A C A G T C C G T A A C T G G T A C A C G T A C T G A C G T G A C T G A T C Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer1e-6-1.403e+010.000037.041.11%8226.218.78%motif file (matrix) svg
53 T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer1e-6-1.391e+010.000019.021.11%2553.15.83%motif file (matrix) svg
54 T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer1e-5-1.314e+010.000058.064.44%17417.939.77%motif file (matrix) svg
55 A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer1e-5-1.297e+010.000019.021.11%2722.96.22%motif file (matrix) svg
56 G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer1e-5-1.293e+010.000017.018.89%2211.25.05%motif file (matrix) svg
57 T G A C C T A G A C T G T A G C C G A T A C T G A T G C C A T G A T C G A T C G A T C G T A G C C T G A T A G C G C T A A C T G C G T A A G C T C G T A C T G A GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer1e-4-1.091e+010.00018.08.89%546.11.25%motif file (matrix) svg
58 T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer1e-4-1.073e+010.000219.021.11%3185.37.27%motif file (matrix) svg
59 C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer1e-4-9.957e+000.000416.017.78%2500.55.71%motif file (matrix) svg
60 C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer1e-4-9.578e+000.000520.022.22%3778.68.63%motif file (matrix) svg
61 A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer1e-3-8.861e+000.001026.028.89%6027.213.76%motif file (matrix) svg
62 C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer1e-3-8.622e+000.00138.08.89%760.31.74%motif file (matrix) svg
63 G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer1e-3-8.542e+000.001420.022.22%4077.49.31%motif file (matrix) svg
64 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer1e-3-8.463e+000.001524.026.67%5462.612.47%motif file (matrix) svg
65 C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer1e-3-8.412e+000.001538.042.22%10869.224.82%motif file (matrix) svg
66 A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer1e-3-8.184e+000.00196.06.67%431.10.98%motif file (matrix) svg
67 T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer1e-2-6.814e+000.00726.06.67%561.71.28%motif file (matrix) svg
68 C G T A G A C T C G A T A T C G G T A C G C A T C A T G C G T A T A C G G C A T G T A C C G T A C A T G A T G C G C T A C T A G G C A T G C A T G C A T G A C T MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer1e-2-6.772e+000.007412.013.33%2082.04.75%motif file (matrix) svg
69 T G C A A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A G T C CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer1e-2-6.716e+000.007717.018.89%3670.88.38%motif file (matrix) svg
70 C G T A A C T G C G T A A C G T C G T A C T G A T C A G T G C A A G C T T G A C TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer1e-2-6.123e+000.013834.037.78%10442.123.84%motif file (matrix) svg
71 A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer1e-2-5.758e+000.01968.08.89%1188.82.71%motif file (matrix) svg
72 C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer1e-2-5.633e+000.021925.027.78%7058.916.12%motif file (matrix) svg
73 G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer1e-2-5.604e+000.022223.025.56%6296.714.38%motif file (matrix) svg
74 C T A G A C G T A G T C C G T A A C T G A G T C G C A T A C T G G C A T A G T C G A C T G A T C G C A T A G T C A G C T ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer1e-2-5.050e+000.03814.04.44%356.60.81%motif file (matrix) svg
75 G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer1e-2-4.712e+000.052720.022.22%5597.712.78%motif file (matrix) svg
76 A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer1e-2-4.692e+000.053123.025.56%6784.915.49%motif file (matrix) svg