Homer de novo Motif Results (output_directory//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
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More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 90
Total background sequences = 43000
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C G T A C T G A G T C A C G T A C T G C G T A A C T G A C T G A C T G A G T C C T G A A C T G 1e-235-5.413e+0262.22%0.00%20.8bp (52.1bp)THAP1/MA0597.1/Jaspar(0.718)
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motif file (matrix)
2 A G T C A G T C A C G T A C T G A C G T A C T G C G T A A C G T G C A T C G T A C G T A A C G T 1e-225-5.193e+0270.00%0.01%12.3bp (4.2bp)Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer(0.739)
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motif file (matrix)
3 C G T A C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G C G T A A G T C A G T C 1e-213-4.920e+0261.11%0.01%9.4bp (0.0bp)SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer(0.726)
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motif file (matrix)
4 A C G T C G T A C G T A C G T A A C G T C G T A A G C T C T A G C T G A C G T A A C T G A C T G 1e-208-4.791e+0267.78%0.02%18.1bp (17.9bp)PB0106.1_Arid5a_2/Jaspar(0.643)
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motif file (matrix)
5 A G T C A C G T A C T G A C G T C T G A C T A G C G T A C T G A A C T G A G T C A C G T A G T C 1e-192-4.441e+0260.00%0.01%26.4bp (21.0bp)POL008.1_DCE_S_I/Jaspar(0.613)
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motif file (matrix)
6 A C T G A G C T A C G T A G C T A G T C C G A T A G C T A C T G C G A T C T A G C T G A G A C T 1e-186-4.302e+0264.44%0.02%11.2bp (39.3bp)MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer(0.614)
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motif file (matrix)
7 C G T A A C G T A G T C A C G T A C T G C G T A C G T A C T A G A G T C A G T C A C G T C T A G 1e-177-4.097e+0266.67%0.04%10.8bp (78.3bp)SIX2/MA1119.1/Jaspar(0.670)
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motif file (matrix)
8 A G C T A G T C C T G A A G T C C T A G G T A C A G T C A G T C G T A C G T C A T C A G A T C G 1e-163-3.762e+0258.89%0.03%10.9bp (65.0bp)TFAP2C(var.2)/MA0814.2/Jaspar(0.665)
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motif file (matrix)
9 C G A T A C T G G T A C A C G T A G T C A C G T C G A T A C G T A G T C A C G T C G T A A G T C 1e-157-3.620e+0248.89%0.01%16.1bp (28.7bp)PRDM4/MA1647.1/Jaspar(0.638)
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motif file (matrix)
10 C T G A C A T G A G T C C G T A C T G A A C G T G C T A T C G A A G C T C T A G A C G T A C T G 1e-153-3.531e+0261.11%0.06%12.4bp (91.6bp)Nobox/MA0125.1/Jaspar(0.668)
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motif file (matrix)
11 C T G A C T G A A G C T G T A C C T G A A C G T A C G T C T G A A G T C A G T C A C G T G A T C 1e-152-3.510e+0252.22%0.02%16.4bp (46.8bp)BARX2/MA1471.1/Jaspar(0.736)
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motif file (matrix)
12 C G T A C G T A A T C G A C T G C G T A C G T A A C G T C T A G A G T C A C G T 1e-129-2.989e+0260.00%0.14%21.1bp (62.6bp)TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer(0.776)
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motif file (matrix)
13 A T G C G A C T T C A G A G T C A G T C T C G A A C T G C G T A C T G A A T C G C T A G C T G A 1e-114-2.646e+0266.67%0.49%20.1bp (71.3bp)Zic1::Zic2/MA1628.1/Jaspar(0.684)
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motif file (matrix)
14 A G T C A C G T C G T A A G T C A G T C A G T C C G T A C G T A A C G T C G T A 1e-113-2.614e+0247.78%0.06%25.2bp (71.2bp)PB0154.1_Osr1_2/Jaspar(0.692)
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motif file (matrix)
15 C G T A C G T A A C G T A G T C C T G A C G T A A C T G A G T C 1e-103-2.380e+0272.22%1.18%11.9bp (81.5bp)Dux/MA0611.1/Jaspar(0.758)
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motif file (matrix)
16 A C G T C G T A A C T G A C T G G T C A C G T A A G T C C G T A A C G T A G T C 1e-98-2.271e+0244.44%0.08%13.3bp (68.4bp)ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer(0.670)
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motif file (matrix)
17 A C G T C G T A A G C T G T A C A C G T C T G A A G C T C G T A A C T G A C T G G T C A C G T A 1e-94-2.173e+0230.00%0.01%3.7bp (9.1bp)MEF2D/MA0773.1/Jaspar(0.647)
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motif file (matrix)
18 A C G T A C G T C G T A T G A C G T A C A C G T G T A C A G T C A C G T A G T C A G T C A C G T 1e-91-2.114e+0236.67%0.03%6.6bp (39.2bp)ZNF263/MA0528.2/Jaspar(0.666)
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motif file (matrix)
19 A G T C C T A G A G T C C T G A A C T G A C G T C T A G A C G T A C G T A G C T 1e-79-1.832e+0251.11%0.51%6.0bp (77.9bp)Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer(0.703)
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motif file (matrix)
20 A G T C A G T C A C G T A G T C A G T C A G T C A C G T A C T G 1e-76-1.752e+0266.67%2.19%7.9bp (74.9bp)ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer(0.789)
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motif file (matrix)
21 A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C G T 1e-67-1.547e+0266.67%3.09%8.1bp (84.7bp)CDX2/MA0465.2/Jaspar(0.878)
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motif file (matrix)
22 A C G T A C G T A C T G A G C T A C G T C G T A G T A C A G T C 1e-66-1.535e+0266.67%3.15%37.6bp (74.7bp)SRY/MA0084.1/Jaspar(0.728)
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motif file (matrix)
23 A C G T A C T G A G T C A G T C A G C T A C G T A C G T A C T G A G T C A C G T A G T C C G T A 1e-46-1.075e+0221.11%0.03%29.7bp (59.2bp)SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer(0.637)
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motif file (matrix)
24 C G T A C G T A A G T C A C G T A C T G A G T C C T A G A C G T A G T C A C G T A C T G A G T C 1e-45-1.039e+0214.44%0.00%19.0bp (0.0bp)HAND2/MA1638.1/Jaspar(0.640)
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motif file (matrix)
25 A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T 1e-33-7.699e+0115.56%0.03%3.8bp (46.9bp)RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer(0.830)
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motif file (matrix)
26 C G T A A C G T A C G T G T A C A C G T A C T G G T C A A G T C A C G T C G T A 1e-29-6.844e+0118.89%0.16%34.6bp (59.0bp)MAFG/MA0659.2/Jaspar(0.656)
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motif file (matrix)
27 A G T C C T G A A G T C C G T A C G T A A C T G A C G T A C T G A C G T A C G T 1e-26-6.176e+0113.33%0.04%20.6bp (88.8bp)Rbpjl/MA1621.1/Jaspar(0.723)
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motif file (matrix)
28 A C G T A G T C A C G T A C T G G T A C A G T C C T G A A G T C 1e-26-6.112e+0134.44%2.43%14.6bp (74.3bp)Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer(0.797)
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motif file (matrix)
29 A C G T C G T A A C T G A C G T C G T A A C G T C G T A C G T A C G T A C T A G G T C A C G T A 1e-23-5.443e+0110.00%0.01%2.1bp (40.6bp)POL012.1_TATA-Box/Jaspar(0.701)
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motif file (matrix)
30 * A C G T A C T G C T G A A G T C G T C A C G T A C G T A A G T C A C G T A C T G 1e-11-2.564e+016.67%0.05%45.6bp (69.6bp)PB0149.1_Myb_2/Jaspar(0.718)
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motif file (matrix)