| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-31 | -7.217e+01 | 0.0000 | 154.0 | 27.02% | 4765.7 | 9.70% | motif file (matrix) |
svg |
| 2 |
| PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer | 1e-24 | -5.535e+01 | 0.0000 | 224.0 | 39.30% | 10071.7 | 20.49% | motif file (matrix) |
svg |
| 3 |
| PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-18 | -4.150e+01 | 0.0000 | 188.0 | 32.98% | 8684.6 | 17.67% | motif file (matrix) |
svg |
| 4 |
| RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-15 | -3.620e+01 | 0.0000 | 199.0 | 34.91% | 9909.6 | 20.16% | motif file (matrix) |
svg |
| 5 |
| COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer | 1e-15 | -3.579e+01 | 0.0000 | 251.0 | 44.04% | 13783.5 | 28.05% | motif file (matrix) |
svg |
| 6 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-11 | -2.727e+01 | 0.0000 | 150.0 | 26.32% | 7339.5 | 14.93% | motif file (matrix) |
svg |
| 7 |
| EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer | 1e-11 | -2.678e+01 | 0.0000 | 224.0 | 39.30% | 12756.3 | 25.96% | motif file (matrix) |
svg |
| 8 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-11 | -2.595e+01 | 0.0000 | 181.0 | 31.75% | 9658.4 | 19.65% | motif file (matrix) |
svg |
| 9 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-10 | -2.502e+01 | 0.0000 | 192.0 | 33.68% | 10567.8 | 21.50% | motif file (matrix) |
svg |
| 10 |
| HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer | 1e-10 | -2.484e+01 | 0.0000 | 39.0 | 6.84% | 937.2 | 1.91% | motif file (matrix) |
svg |
| 11 |
| Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-10 | -2.410e+01 | 0.0000 | 324.0 | 56.84% | 21200.7 | 43.14% | motif file (matrix) |
svg |
| 12 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-10 | -2.409e+01 | 0.0000 | 188.0 | 32.98% | 10383.8 | 21.13% | motif file (matrix) |
svg |
| 13 |
| Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer | 1e-10 | -2.365e+01 | 0.0000 | 143.0 | 25.09% | 7214.0 | 14.68% | motif file (matrix) |
svg |
| 14 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-10 | -2.309e+01 | 0.0000 | 75.0 | 13.16% | 2888.7 | 5.88% | motif file (matrix) |
svg |
| 15 |
| HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-9 | -2.280e+01 | 0.0000 | 95.0 | 16.67% | 4118.0 | 8.38% | motif file (matrix) |
svg |
| 16 |
| Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer | 1e-9 | -2.278e+01 | 0.0000 | 82.0 | 14.39% | 3323.0 | 6.76% | motif file (matrix) |
svg |
| 17 |
| TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-9 | -2.262e+01 | 0.0000 | 41.0 | 7.19% | 1105.3 | 2.25% | motif file (matrix) |
svg |
| 18 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-9 | -2.201e+01 | 0.0000 | 203.0 | 35.61% | 11766.0 | 23.94% | motif file (matrix) |
svg |
| 19 |
| Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer | 1e-9 | -2.093e+01 | 0.0000 | 35.0 | 6.14% | 891.7 | 1.81% | motif file (matrix) |
svg |
| 20 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-8 | -1.918e+01 | 0.0000 | 254.0 | 44.56% | 16173.9 | 32.91% | motif file (matrix) |
svg |
| 21 |
| Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-7 | -1.809e+01 | 0.0000 | 45.0 | 7.89% | 1506.6 | 3.07% | motif file (matrix) |
svg |
| 22 |
| ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer | 1e-7 | -1.763e+01 | 0.0000 | 144.0 | 25.26% | 7965.6 | 16.21% | motif file (matrix) |
svg |
| 23 |
| NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer | 1e-6 | -1.568e+01 | 0.0000 | 92.0 | 16.14% | 4562.9 | 9.28% | motif file (matrix) |
svg |
| 24 |
| Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.430e+01 | 0.0000 | 120.0 | 21.05% | 6667.0 | 13.57% | motif file (matrix) |
svg |
| 25 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-6 | -1.421e+01 | 0.0000 | 117.0 | 20.53% | 6465.5 | 13.16% | motif file (matrix) |
svg |
| 26 |
| RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer | 1e-5 | -1.365e+01 | 0.0000 | 372.0 | 65.26% | 27251.7 | 55.45% | motif file (matrix) |
svg |
| 27 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-5 | -1.351e+01 | 0.0000 | 451.0 | 79.12% | 34570.7 | 70.34% | motif file (matrix) |
svg |
| 28 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-5 | -1.157e+01 | 0.0001 | 149.0 | 26.14% | 9222.5 | 18.77% | motif file (matrix) |
svg |
| 29 |
| CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-4 | -1.067e+01 | 0.0004 | 88.0 | 15.44% | 4872.8 | 9.91% | motif file (matrix) |
svg |
| 30 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-4 | -9.886e+00 | 0.0007 | 109.0 | 19.12% | 6505.8 | 13.24% | motif file (matrix) |
svg |
| 31 |
| CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer | 1e-4 | -9.805e+00 | 0.0008 | 92.0 | 16.14% | 5278.3 | 10.74% | motif file (matrix) |
svg |
| 32 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-4 | -9.636e+00 | 0.0009 | 125.0 | 21.93% | 7741.1 | 15.75% | motif file (matrix) |
svg |
| 33 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-4 | -9.295e+00 | 0.0012 | 16.0 | 2.81% | 446.5 | 0.91% | motif file (matrix) |
svg |
| 34 |
| VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer | 1e-3 | -9.171e+00 | 0.0013 | 40.0 | 7.02% | 1811.4 | 3.69% | motif file (matrix) |
svg |
| 35 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.547e+00 | 0.0024 | 191.0 | 33.51% | 13123.5 | 26.70% | motif file (matrix) |
svg |
| 36 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-3 | -7.877e+00 | 0.0046 | 91.0 | 15.96% | 5508.9 | 11.21% | motif file (matrix) |
svg |
| 37 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-3 | -7.516e+00 | 0.0065 | 129.0 | 22.63% | 8456.5 | 17.21% | motif file (matrix) |
svg |
| 38 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-3 | -7.118e+00 | 0.0094 | 128.0 | 22.46% | 8464.3 | 17.22% | motif file (matrix) |
svg |
| 39 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -7.056e+00 | 0.0097 | 65.0 | 11.40% | 3748.6 | 7.63% | motif file (matrix) |
svg |
| 40 |
| FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer | 1e-2 | -6.866e+00 | 0.0115 | 129.0 | 22.63% | 8598.3 | 17.50% | motif file (matrix) |
svg |
| 41 |
| BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-2 | -6.483e+00 | 0.0164 | 190.0 | 33.33% | 13567.8 | 27.61% | motif file (matrix) |
svg |
| 42 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.313e+00 | 0.0190 | 216.0 | 37.89% | 15751.5 | 32.05% | motif file (matrix) |
svg |
| 43 |
| FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer | 1e-2 | -6.306e+00 | 0.0190 | 57.0 | 10.00% | 3289.3 | 6.69% | motif file (matrix) |
svg |
| 44 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-2 | -6.070e+00 | 0.0231 | 81.0 | 14.21% | 5089.4 | 10.36% | motif file (matrix) |
svg |
| 45 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-2 | -6.042e+00 | 0.0232 | 118.0 | 20.70% | 7929.2 | 16.13% | motif file (matrix) |
svg |
| 46 |
| TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer | 1e-2 | -5.788e+00 | 0.0293 | 236.0 | 41.40% | 17577.9 | 35.77% | motif file (matrix) |
svg |
| 47 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-2 | -5.708e+00 | 0.0311 | 230.0 | 40.35% | 17101.9 | 34.80% | motif file (matrix) |
svg |
| 48 |
| ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer | 1e-2 | -5.087e+00 | 0.0566 | 38.0 | 6.67% | 2123.0 | 4.32% | motif file (matrix) |
svg |
| 49 |
| Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-2 | -4.958e+00 | 0.0631 | 36.0 | 6.32% | 2000.7 | 4.07% | motif file (matrix) |
svg |
| 50 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-2 | -4.927e+00 | 0.0638 | 131.0 | 22.98% | 9243.6 | 18.81% | motif file (matrix) |
svg |
| 51 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-2 | -4.761e+00 | 0.0739 | 86.0 | 15.09% | 5746.7 | 11.69% | motif file (matrix) |
svg |
| 52 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-2 | -4.704e+00 | 0.0767 | 12.0 | 2.11% | 464.2 | 0.94% | motif file (matrix) |
svg |
| 53 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.695e+00 | 0.0767 | 50.0 | 8.77% | 3043.7 | 6.19% | motif file (matrix) |
svg |