Information for 18-NGCGCRTTAN (Motif 15)


Reverse Opposite:

p-value:1e-167
log p-value:-3.859e+02
Information Content per bp:1.453
Number of Target Sequences with motif4106.0
Percentage of Target Sequences with motif7.04%
Number of Background Sequences with motif2569.3
Percentage of Background Sequences with motif4.48%
Average Position of motif in Targets848.7 +/- 1004.1bp
Average Position of motif in Background360.4 +/- 240.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0126.1_Obox6/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---NGCGCRTTAN--
AAAAACGGATTATTG

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---NGCGCRTTAN----
NNNACCTCATTATCNTN

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----NGCGCRTTAN-
NTCGCGCGCCTTNNN

PH0015.1_Crx/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---NGCGCRTTAN---
CGTTGGGGATTAGCCT

PH0035.1_Gsc/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--NGCGCRTTAN-----
NNAAGGGATTAACGANT

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---NGCGCRTTAN----
TGAACCGGATTAATGAA

PH0152.1_Pou6f1_2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---NGCGCRTTAN----
GCAACCTCATTATNNNN

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:NGCGCRTTAN
GGCGCGCT--

MA0132.1_Pdx1/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:NGCGCRTTAN
----AATTAG

PB0009.1_E2F3_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----NGCGCRTTAN-
ANCGCGCGCCCTTNN